Cluster: HRGMv2_0310_CGC6
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_0310
- CGC Family ID: CGCFAM_00574
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0310_4 | HRGMv2_0310_4_23 | 25429 | 26901 | - | 2.A.1.1.3 |
| pfam | HRGMv2_0310_4 | HRGMv2_0310_4_24 | 27004 | 28323 | - | AP_endonuc_2 |
| pfam | HRGMv2_0310_4 | HRGMv2_0310_4_25 | 28344 | 29825 | - | FGGY_N | FGGY_C |
| CAZyme | HRGMv2_0310_4 | HRGMv2_0310_4_26 | 30073 | 31836 | - | GH5_4 |
| NULL(UNKNOWN) | HRGMv2_0310_4 | HRGMv2_0310_4_27 | 31862 | 33988 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| NULL(UNKNOWN) | HRGMv2_0310_4 | HRGMv2_0310_4_28 | 34002 | 35777 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_0310_4 | HRGMv2_0310_4_29 | 35856 | 37523 | - | 8.A.46.1.2 |
| TC | HRGMv2_0310_4 | HRGMv2_0310_4_30 | 37600 | 40767 | - | 1.B.14.6.1 |
| TF | HRGMv2_0310_4 | HRGMv2_0310_4_31 | 41189 | 45193 | + | HTH_AraC | HTH_AraC |
| CAZyme | HRGMv2_0310_4 | HRGMv2_0310_4_32 | 45442 | 48324 | + | GH31_4 |
| CAZyme | HRGMv2_0310_4 | HRGMv2_0310_4_33 | 48399 | 50876 | + | GH2 |
Gene ID: HRGMv2_0310_4_23
Type: TC
Location: 25429 - 26901 (-)
Type: TC
Location: 25429 - 26901 (-)
Gene ID: HRGMv2_0310_4_24
Type: pfam
Location: 27004 - 28323 (-)
Type: pfam
Location: 27004 - 28323 (-)
Gene ID: HRGMv2_0310_4_25
Type: pfam
Location: 28344 - 29825 (-)
Type: pfam
Location: 28344 - 29825 (-)
Gene ID: HRGMv2_0310_4_26
Type: CAZyme
Location: 30073 - 31836 (-)
Type: CAZyme
Location: 30073 - 31836 (-)
Gene ID: HRGMv2_0310_4_27
Type:
Location: 31862 - 33988 (-)
Type:
Location: 31862 - 33988 (-)
Gene ID: HRGMv2_0310_4_28
Type:
Location: 34002 - 35777 (-)
Type:
Location: 34002 - 35777 (-)
Gene ID: HRGMv2_0310_4_29
Type: TC
Location: 35856 - 37523 (-)
Type: TC
Location: 35856 - 37523 (-)
Gene ID: HRGMv2_0310_4_30
Type: TC
Location: 37600 - 40767 (-)
Type: TC
Location: 37600 - 40767 (-)
Gene ID: HRGMv2_0310_4_31
Type: TF
Location: 41189 - 45193 (+)
Type: TF
Location: 41189 - 45193 (+)
Gene ID: HRGMv2_0310_4_32
Type: CAZyme
Location: 45442 - 48324 (+)
Type: CAZyme
Location: 45442 - 48324 (+)
Gene ID: HRGMv2_0310_4_33
Type: CAZyme
Location: 48399 - 50876 (+)
Type: CAZyme
Location: 48399 - 50876 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Muribaculaceae
Genus
Lepagella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.