Cluster: HRGMv2_0310_CGC29
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_0310
- CGC Family ID: CGCFAM_04499
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0310_21 | HRGMv2_0310_21_2 | 1268 | 2290 | - | 9.B.18.2.1 |
| pfam | HRGMv2_0310_21 | HRGMv2_0310_21_3 | 2333 | 3364 | - | Acyl_transf_3 |
| CAZyme | HRGMv2_0310_21 | HRGMv2_0310_21_4 | 3346 | 4398 | - | GT4 |
| TC | HRGMv2_0310_21 | HRGMv2_0310_21_5 | 4604 | 7012 | - | 8.A.3.3.4 |
| pfam | HRGMv2_0310_21 | HRGMv2_0310_21_6 | 7192 | 8034 | - | Poly_export | SLBB_2 |
| TC | HRGMv2_0310_21 | HRGMv2_0310_21_7 | 8485 | 9606 | - | 9.B.146.1.4 |
| NULL(UNKNOWN) | HRGMv2_0310_21 | HRGMv2_0310_21_8 | 9621 | 9728 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | HRGMv2_0310_21 | HRGMv2_0310_21_9 | 9749 | 10300 | - | NusG |
| CAZyme | HRGMv2_0310_21 | HRGMv2_0310_21_10 | 10896 | 12089 | + | CE1 |
| pfam | HRGMv2_0310_21 | HRGMv2_0310_21_11 | 12475 | 13473 | + | Radical_SAM | BATS |
| CAZyme | HRGMv2_0310_21 | HRGMv2_0310_21_12 | 13529 | 14479 | + | GT2 |
Gene ID: HRGMv2_0310_21_2
Type: TC
Location: 1268 - 2290 (-)
Type: TC
Location: 1268 - 2290 (-)
Gene ID: HRGMv2_0310_21_3
Type: pfam
Location: 2333 - 3364 (-)
Type: pfam
Location: 2333 - 3364 (-)
Gene ID: HRGMv2_0310_21_4
Type: CAZyme
Location: 3346 - 4398 (-)
Type: CAZyme
Location: 3346 - 4398 (-)
Gene ID: HRGMv2_0310_21_5
Type: TC
Location: 4604 - 7012 (-)
Type: TC
Location: 4604 - 7012 (-)
Gene ID: HRGMv2_0310_21_6
Type: pfam
Location: 7192 - 8034 (-)
Type: pfam
Location: 7192 - 8034 (-)
Gene ID: HRGMv2_0310_21_7
Type: TC
Location: 8485 - 9606 (-)
Type: TC
Location: 8485 - 9606 (-)
Gene ID: HRGMv2_0310_21_8
Type:
Location: 9621 - 9728 (+)
Type:
Location: 9621 - 9728 (+)
Gene ID: HRGMv2_0310_21_9
Type: pfam
Location: 9749 - 10300 (-)
Type: pfam
Location: 9749 - 10300 (-)
Gene ID: HRGMv2_0310_21_10
Type: CAZyme
Location: 10896 - 12089 (+)
Type: CAZyme
Location: 10896 - 12089 (+)
Gene ID: HRGMv2_0310_21_11
Type: pfam
Location: 12475 - 13473 (+)
Type: pfam
Location: 12475 - 13473 (+)
Gene ID: HRGMv2_0310_21_12
Type: CAZyme
Location: 13529 - 14479 (+)
Type: CAZyme
Location: 13529 - 14479 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Muribaculaceae
Genus
Lepagella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.