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Cluster: HRGMv2_0298_CGC24

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_0298_28 HRGMv2_0298_28_1 436 2097 + GT3
CAZyme HRGMv2_0298_28 HRGMv2_0298_28_2 2130 4691 + GT35
STP HRGMv2_0298_28 HRGMv2_0298_28_3 5019 5549 + Nitroreductase | Nitroreductase
TF HRGMv2_0298_28 HRGMv2_0298_28_4 5720 6532 - HTH_AraC
TC HRGMv2_0298_28 HRGMv2_0298_28_5 6839 8197 + 2.A.66.1.32
pfam HRGMv2_0298_28 HRGMv2_0298_28_6 8667 9719 + RecA | Rad51 | RecA_C
TC HRGMv2_0298_28 HRGMv2_0298_28_7 10077 12605 + 1.B.18.1.2
NULL(UNKNOWN) HRGMv2_0298_28 HRGMv2_0298_28_8 13103 13201 - NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_0298_28 HRGMv2_0298_28_9 13349 15271 + 1.A.33.1.2
Gene ID: HRGMv2_0298_28_1
Type: CAZyme
Location: 436 - 2097 (+)
Gene ID: HRGMv2_0298_28_2
Type: CAZyme
Location: 2130 - 4691 (+)
Gene ID: HRGMv2_0298_28_3
Type: STP
Location: 5019 - 5549 (+)
Gene ID: HRGMv2_0298_28_4
Type: TF
Location: 5720 - 6532 (-)
Gene ID: HRGMv2_0298_28_5
Type: TC
Location: 6839 - 8197 (+)
Gene ID: HRGMv2_0298_28_6
Type: pfam
Location: 8667 - 9719 (+)
Gene ID: HRGMv2_0298_28_7
Type: TC
Location: 10077 - 12605 (+)
Gene ID: HRGMv2_0298_28_8
Type:
Location: 13103 - 13201 (-)
Gene ID: HRGMv2_0298_28_9
Type: TC
Location: 13349 - 15271 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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