Cluster: HRGMv2_0259_CGC5
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 8
- Substrate: pectin
- Genome ID: HRGMv2_0259
- CGC Family ID: CGCFAM_01475
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0259_2 | HRGMv2_0259_2_45 | 64995 | 68189 | + | 1.B.14.6.1 |
| pfam | HRGMv2_0259_2 | HRGMv2_0259_2_46 | 68222 | 70357 | + | SusD_RagB | SusD-like_3 |
| CAZyme | HRGMv2_0259_2 | HRGMv2_0259_2_47 | 70484 | 72391 | + | PL11_1 |
| CAZyme | HRGMv2_0259_2 | HRGMv2_0259_2_48 | 72452 | 75187 | + | CE12 | CE12 | CE12 |
| CAZyme | HRGMv2_0259_2 | HRGMv2_0259_2_49 | 75200 | 76633 | + | GH105 |
| CAZyme | HRGMv2_0259_2 | HRGMv2_0259_2_50 | 76711 | 79191 | + | GH2 |
| CAZyme | HRGMv2_0259_2 | HRGMv2_0259_2_51 | 79220 | 82456 | + | CE12 | GH28 |
| CAZyme | HRGMv2_0259_2 | HRGMv2_0259_2_52 | 82987 | 84405 | - | GH13_28 |
| CAZyme | HRGMv2_0259_2 | HRGMv2_0259_2_53 | 84508 | 85368 | - | GH16_3 |
| peptidase | HRGMv2_0259_2 | HRGMv2_0259_2_54 | 85505 | 86086 | + | C40.UPW |
| NULL(UNKNOWN) | HRGMv2_0259_2 | HRGMv2_0259_2_55 | 86237 | 89185 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_0259_2 | HRGMv2_0259_2_56 | 89194 | 90648 | + | GT2 |
Gene ID: HRGMv2_0259_2_45
Type: TC
Location: 64995 - 68189 (+)
Type: TC
Location: 64995 - 68189 (+)
Gene ID: HRGMv2_0259_2_46
Type: pfam
Location: 68222 - 70357 (+)
Type: pfam
Location: 68222 - 70357 (+)
Gene ID: HRGMv2_0259_2_47
Type: CAZyme
Location: 70484 - 72391 (+)
Type: CAZyme
Location: 70484 - 72391 (+)
Gene ID: HRGMv2_0259_2_48
Type: CAZyme
Location: 72452 - 75187 (+)
Type: CAZyme
Location: 72452 - 75187 (+)
Gene ID: HRGMv2_0259_2_49
Type: CAZyme
Location: 75200 - 76633 (+)
Type: CAZyme
Location: 75200 - 76633 (+)
Gene ID: HRGMv2_0259_2_50
Type: CAZyme
Location: 76711 - 79191 (+)
Type: CAZyme
Location: 76711 - 79191 (+)
Gene ID: HRGMv2_0259_2_51
Type: CAZyme
Location: 79220 - 82456 (+)
Type: CAZyme
Location: 79220 - 82456 (+)
Gene ID: HRGMv2_0259_2_52
Type: CAZyme
Location: 82987 - 84405 (-)
Type: CAZyme
Location: 82987 - 84405 (-)
Gene ID: HRGMv2_0259_2_53
Type: CAZyme
Location: 84508 - 85368 (-)
Type: CAZyme
Location: 84508 - 85368 (-)
Gene ID: HRGMv2_0259_2_54
Type: peptidase
Location: 85505 - 86086 (+)
Type: peptidase
Location: 85505 - 86086 (+)
Gene ID: HRGMv2_0259_2_55
Type:
Location: 86237 - 89185 (+)
Type:
Location: 86237 - 89185 (+)
Gene ID: HRGMv2_0259_2_56
Type: CAZyme
Location: 89194 - 90648 (+)
Type: CAZyme
Location: 89194 - 90648 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Muribaculaceae
Genus
CAG-873
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.