Cluster: HRGMv2_0259_CGC26
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 4
- Substrate:
- Genome ID: HRGMv2_0259
- CGC Family ID: CGCFAM_00296
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0259_19 | HRGMv2_0259_19_11 | 12793 | 14172 | + | 2.A.66.1.37 |
| TC | HRGMv2_0259_19 | HRGMv2_0259_19_12 | 14180 | 14503 | - | 2.A.7.1.4 |
| pfam | HRGMv2_0259_19 | HRGMv2_0259_19_13 | 14648 | 15466 | - | CMD |
| pfam | HRGMv2_0259_19 | HRGMv2_0259_19_14 | 15673 | 16905 | - | Aminotran_1_2 | DegT_DnrJ_EryC1 | DegT_DnrJ_EryC1 |
| CAZyme | HRGMv2_0259_19 | HRGMv2_0259_19_15 | 16935 | 20339 | - | GH89 |
| CAZyme | HRGMv2_0259_19 | HRGMv2_0259_19_16 | 20320 | 21678 | - | GH28 |
| NULL(UNKNOWN) | HRGMv2_0259_19 | HRGMv2_0259_19_17 | 21760 | 23190 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | HRGMv2_0259_19 | HRGMv2_0259_19_18 | 23281 | 24942 | - | SusD_RagB | SusD-like_3 |
| TC | HRGMv2_0259_19 | HRGMv2_0259_19_19 | 24976 | 28008 | - | 1.B.14.6.1 |
| TC | HRGMv2_0259_19 | HRGMv2_0259_19_20 | 28470 | 29678 | + | 2.A.1.7.1 |
| STP | HRGMv2_0259_19 | HRGMv2_0259_19_21 | 29715 | 30638 | + | PfkB |
| CAZyme | HRGMv2_0259_19 | HRGMv2_0259_19_22 | 30683 | 33403 | + | CBM13 |
| CAZyme | HRGMv2_0259_19 | HRGMv2_0259_19_23 | 33404 | 35632 | - | GH92 |
Gene ID: HRGMv2_0259_19_11
Type: TC
Location: 12793 - 14172 (+)
Type: TC
Location: 12793 - 14172 (+)
Gene ID: HRGMv2_0259_19_12
Type: TC
Location: 14180 - 14503 (-)
Type: TC
Location: 14180 - 14503 (-)
Gene ID: HRGMv2_0259_19_13
Type: pfam
Location: 14648 - 15466 (-)
Type: pfam
Location: 14648 - 15466 (-)
Gene ID: HRGMv2_0259_19_14
Type: pfam
Location: 15673 - 16905 (-)
Type: pfam
Location: 15673 - 16905 (-)
Gene ID: HRGMv2_0259_19_15
Type: CAZyme
Location: 16935 - 20339 (-)
Type: CAZyme
Location: 16935 - 20339 (-)
Gene ID: HRGMv2_0259_19_16
Type: CAZyme
Location: 20320 - 21678 (-)
Type: CAZyme
Location: 20320 - 21678 (-)
Gene ID: HRGMv2_0259_19_17
Type:
Location: 21760 - 23190 (-)
Type:
Location: 21760 - 23190 (-)
Gene ID: HRGMv2_0259_19_18
Type: pfam
Location: 23281 - 24942 (-)
Type: pfam
Location: 23281 - 24942 (-)
Gene ID: HRGMv2_0259_19_19
Type: TC
Location: 24976 - 28008 (-)
Type: TC
Location: 24976 - 28008 (-)
Gene ID: HRGMv2_0259_19_20
Type: TC
Location: 28470 - 29678 (+)
Type: TC
Location: 28470 - 29678 (+)
Gene ID: HRGMv2_0259_19_21
Type: STP
Location: 29715 - 30638 (+)
Type: STP
Location: 29715 - 30638 (+)
Gene ID: HRGMv2_0259_19_22
Type: CAZyme
Location: 30683 - 33403 (+)
Type: CAZyme
Location: 30683 - 33403 (+)
Gene ID: HRGMv2_0259_19_23
Type: CAZyme
Location: 33404 - 35632 (-)
Type: CAZyme
Location: 33404 - 35632 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Muribaculaceae
Genus
CAG-873
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.