Cluster: HRGMv2_0259_CGC23
🧬 Cluster Details
- Gene Count: 15
- CAZyme Count: 8
- Substrate:
- Genome ID: HRGMv2_0259
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0259_15 | HRGMv2_0259_15_6 | 3970 | 5565 | + | GT83 |
| TC | HRGMv2_0259_15 | HRGMv2_0259_15_7 | 5608 | 7446 | + | 2.A.47.4.8 |
| CAZyme | HRGMv2_0259_15 | HRGMv2_0259_15_8 | 7520 | 10831 | - | PL26 |
| pfam | HRGMv2_0259_15 | HRGMv2_0259_15_9 | 10853 | 11929 | - | DAHP_synth_1 | CM_2 |
| TC | HRGMv2_0259_15 | HRGMv2_0259_15_10 | 12072 | 13076 | - | 8.A.5.1.3 |
| CAZyme | HRGMv2_0259_15 | HRGMv2_0259_15_11 | 13073 | 15058 | - | GH51_2 |
| CAZyme | HRGMv2_0259_15 | HRGMv2_0259_15_12 | 15068 | 18175 | - | GH2 |
| CAZyme | HRGMv2_0259_15 | HRGMv2_0259_15_13 | 18273 | 20582 | - | GH105 | GH154 |
| CAZyme | HRGMv2_0259_15 | HRGMv2_0259_15_14 | 20684 | 21769 | - | GH43_24 |
| TF | HRGMv2_0259_15 | HRGMv2_0259_15_15 | 21766 | 25836 | - | HTH_AraC |
| TC | HRGMv2_0259_15 | HRGMv2_0259_15_16 | 26258 | 29551 | + | 1.B.14.6.2 |
| pfam | HRGMv2_0259_15 | HRGMv2_0259_15_17 | 29604 | 31721 | + | SusD_RagB | SusD-like_3 |
| CAZyme | HRGMv2_0259_15 | HRGMv2_0259_15_18 | 31952 | 34822 | + | GH127 | GH43_34 |
| CAZyme | HRGMv2_0259_15 | HRGMv2_0259_15_19 | 34843 | 36786 | + | GH97 |
| TC | HRGMv2_0259_15 | HRGMv2_0259_15_20 | 36871 | 37713 | - | 1.A.30.1.3 |
Gene ID: HRGMv2_0259_15_6
Type: CAZyme
Location: 3970 - 5565 (+)
Type: CAZyme
Location: 3970 - 5565 (+)
Gene ID: HRGMv2_0259_15_7
Type: TC
Location: 5608 - 7446 (+)
Type: TC
Location: 5608 - 7446 (+)
Gene ID: HRGMv2_0259_15_8
Type: CAZyme
Location: 7520 - 10831 (-)
Type: CAZyme
Location: 7520 - 10831 (-)
Gene ID: HRGMv2_0259_15_9
Type: pfam
Location: 10853 - 11929 (-)
Type: pfam
Location: 10853 - 11929 (-)
Gene ID: HRGMv2_0259_15_10
Type: TC
Location: 12072 - 13076 (-)
Type: TC
Location: 12072 - 13076 (-)
Gene ID: HRGMv2_0259_15_11
Type: CAZyme
Location: 13073 - 15058 (-)
Type: CAZyme
Location: 13073 - 15058 (-)
Gene ID: HRGMv2_0259_15_12
Type: CAZyme
Location: 15068 - 18175 (-)
Type: CAZyme
Location: 15068 - 18175 (-)
Gene ID: HRGMv2_0259_15_13
Type: CAZyme
Location: 18273 - 20582 (-)
Type: CAZyme
Location: 18273 - 20582 (-)
Gene ID: HRGMv2_0259_15_14
Type: CAZyme
Location: 20684 - 21769 (-)
Type: CAZyme
Location: 20684 - 21769 (-)
Gene ID: HRGMv2_0259_15_15
Type: TF
Location: 21766 - 25836 (-)
Type: TF
Location: 21766 - 25836 (-)
Gene ID: HRGMv2_0259_15_16
Type: TC
Location: 26258 - 29551 (+)
Type: TC
Location: 26258 - 29551 (+)
Gene ID: HRGMv2_0259_15_17
Type: pfam
Location: 29604 - 31721 (+)
Type: pfam
Location: 29604 - 31721 (+)
Gene ID: HRGMv2_0259_15_18
Type: CAZyme
Location: 31952 - 34822 (+)
Type: CAZyme
Location: 31952 - 34822 (+)
Gene ID: HRGMv2_0259_15_19
Type: CAZyme
Location: 34843 - 36786 (+)
Type: CAZyme
Location: 34843 - 36786 (+)
Gene ID: HRGMv2_0259_15_20
Type: TC
Location: 36871 - 37713 (-)
Type: TC
Location: 36871 - 37713 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Muribaculaceae
Genus
CAG-873
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.