Cluster: HRGMv2_0252_CGC4
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 5
- Substrate:
- Genome ID: HRGMv2_0252
- CGC Family ID: CGCFAM_01744
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0252_1 | HRGMv2_0252_1_160 | 202067 | 203014 | - | 1.A.35.1.2 |
| STP | HRGMv2_0252_1 | HRGMv2_0252_1_161 | 203146 | 203748 | - | SIS |
| pfam | HRGMv2_0252_1 | HRGMv2_0252_1_162 | 203759 | 204718 | - | ROK |
| CAZyme | HRGMv2_0252_1 | HRGMv2_0252_1_163 | 204693 | 207143 | - | GH2 |
| CAZyme | HRGMv2_0252_1 | HRGMv2_0252_1_164 | 207156 | 209198 | - | GH36 |
| CAZyme | HRGMv2_0252_1 | HRGMv2_0252_1_165 | 209206 | 211254 | - | GH36 |
| CAZyme | HRGMv2_0252_1 | HRGMv2_0252_1_166 | 211285 | 215373 | - | CBM67 | GH173 | GH78 |
| CAZyme | HRGMv2_0252_1 | HRGMv2_0252_1_167 | 215402 | 216661 | - | GH5_57 |
| NULL(UNKNOWN) | HRGMv2_0252_1 | HRGMv2_0252_1_168 | 216674 | 218470 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | HRGMv2_0252_1 | HRGMv2_0252_1_169 | 218508 | 220403 | - | SusD_RagB | SusD-like_3 |
| TC | HRGMv2_0252_1 | HRGMv2_0252_1_170 | 220421 | 223510 | - | 1.B.14.6.1 |
| TF | HRGMv2_0252_1 | HRGMv2_0252_1_171 | 223668 | 224642 | - | LacI |
| TC | HRGMv2_0252_1 | HRGMv2_0252_1_172 | 224761 | 225294 | - | 2.A.107.1.1 |
Gene ID: HRGMv2_0252_1_160
Type: TC
Location: 202067 - 203014 (-)
Type: TC
Location: 202067 - 203014 (-)
Gene ID: HRGMv2_0252_1_161
Type: STP
Location: 203146 - 203748 (-)
Type: STP
Location: 203146 - 203748 (-)
Gene ID: HRGMv2_0252_1_162
Type: pfam
Location: 203759 - 204718 (-)
Type: pfam
Location: 203759 - 204718 (-)
Gene ID: HRGMv2_0252_1_163
Type: CAZyme
Location: 204693 - 207143 (-)
Type: CAZyme
Location: 204693 - 207143 (-)
Gene ID: HRGMv2_0252_1_164
Type: CAZyme
Location: 207156 - 209198 (-)
Type: CAZyme
Location: 207156 - 209198 (-)
Gene ID: HRGMv2_0252_1_165
Type: CAZyme
Location: 209206 - 211254 (-)
Type: CAZyme
Location: 209206 - 211254 (-)
Gene ID: HRGMv2_0252_1_166
Type: CAZyme
Location: 211285 - 215373 (-)
Type: CAZyme
Location: 211285 - 215373 (-)
Gene ID: HRGMv2_0252_1_167
Type: CAZyme
Location: 215402 - 216661 (-)
Type: CAZyme
Location: 215402 - 216661 (-)
Gene ID: HRGMv2_0252_1_168
Type:
Location: 216674 - 218470 (-)
Type:
Location: 216674 - 218470 (-)
Gene ID: HRGMv2_0252_1_169
Type: pfam
Location: 218508 - 220403 (-)
Type: pfam
Location: 218508 - 220403 (-)
Gene ID: HRGMv2_0252_1_170
Type: TC
Location: 220421 - 223510 (-)
Type: TC
Location: 220421 - 223510 (-)
Gene ID: HRGMv2_0252_1_171
Type: TF
Location: 223668 - 224642 (-)
Type: TF
Location: 223668 - 224642 (-)
Gene ID: HRGMv2_0252_1_172
Type: TC
Location: 224761 - 225294 (-)
Type: TC
Location: 224761 - 225294 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
UBA932
Genus
Cryptobacteroides
Species
Cryptobacteroides sp900316045
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.