Cluster: HRGMv2_0215_CGC9
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate: beta-glucan
- Genome ID: HRGMv2_0215
- CGC Family ID: CGCFAM_00719
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0215_8 | HRGMv2_0215_8_12 | 13544 | 16207 | + | GH3 |
| pfam | HRGMv2_0215_8 | HRGMv2_0215_8_13 | 16735 | 17625 | + | Abi_2 |
| TC | HRGMv2_0215_8 | HRGMv2_0215_8_14 | 18201 | 19922 | - | 8.A.46.2.1 |
| TC | HRGMv2_0215_8 | HRGMv2_0215_8_15 | 19959 | 23390 | - | 1.B.14.6.2 |
Gene ID: HRGMv2_0215_8_12
Type: CAZyme
Location: 13544 - 16207 (+)
Type: CAZyme
Location: 13544 - 16207 (+)
Gene ID: HRGMv2_0215_8_13
Type: pfam
Location: 16735 - 17625 (+)
Type: pfam
Location: 16735 - 17625 (+)
Gene ID: HRGMv2_0215_8_14
Type: TC
Location: 18201 - 19922 (-)
Type: TC
Location: 18201 - 19922 (-)
Gene ID: HRGMv2_0215_8_15
Type: TC
Location: 19959 - 23390 (-)
Type: TC
Location: 19959 - 23390 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Prevotella
Species
Prevotella copri_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0215_8_12 | vegetarian > vegan | 1.74934 | 0.01557 |