Cluster: HRGMv2_0215_CGC7
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 2
- Substrate: alpha-glucan
- Genome ID: HRGMv2_0215
- CGC Family ID: CGCFAM_00442
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0215_6 | HRGMv2_0215_6_31 | 32657 | 34393 | - | GH13_44 |
| CAZyme | HRGMv2_0215_6 | HRGMv2_0215_6_32 | 34452 | 36554 | - | GH97 |
| TC | HRGMv2_0215_6 | HRGMv2_0215_6_33 | 36649 | 38376 | - | 8.A.46.1.6 |
| TC | HRGMv2_0215_6 | HRGMv2_0215_6_34 | 38448 | 41423 | - | 1.B.14.6.1 |
Gene ID: HRGMv2_0215_6_31
Type: CAZyme
Location: 32657 - 34393 (-)
Type: CAZyme
Location: 32657 - 34393 (-)
Gene ID: HRGMv2_0215_6_32
Type: CAZyme
Location: 34452 - 36554 (-)
Type: CAZyme
Location: 34452 - 36554 (-)
Gene ID: HRGMv2_0215_6_33
Type: TC
Location: 36649 - 38376 (-)
Type: TC
Location: 36649 - 38376 (-)
Gene ID: HRGMv2_0215_6_34
Type: TC
Location: 38448 - 41423 (-)
Type: TC
Location: 38448 - 41423 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Prevotella
Species
Prevotella copri_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0215_6_34 | vegetarian > vegan | 1.21359 | 0.01557 |