Cluster: HRGMv2_0215_CGC51
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_0215
- CGC Family ID: CGCFAM_00341
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0215_106 | HRGMv2_0215_106_6 | 5965 | 7671 | + | GT83 |
| CAZyme | HRGMv2_0215_106 | HRGMv2_0215_106_7 | 7767 | 8696 | - | GT2 |
| NULL(UNKNOWN) | HRGMv2_0215_106 | HRGMv2_0215_106_8 | 8863 | 10959 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | HRGMv2_0215_106 | HRGMv2_0215_106_9 | 11167 | 11805 | + | DUF4294 |
| TC | HRGMv2_0215_106 | HRGMv2_0215_106_10 | 11877 | 14078 | - | 3.A.1.112.9 |
Gene ID: HRGMv2_0215_106_6
Type: CAZyme
Location: 5965 - 7671 (+)
Type: CAZyme
Location: 5965 - 7671 (+)
Gene ID: HRGMv2_0215_106_7
Type: CAZyme
Location: 7767 - 8696 (-)
Type: CAZyme
Location: 7767 - 8696 (-)
Gene ID: HRGMv2_0215_106_8
Type:
Location: 8863 - 10959 (-)
Type:
Location: 8863 - 10959 (-)
Gene ID: HRGMv2_0215_106_9
Type: pfam
Location: 11167 - 11805 (+)
Type: pfam
Location: 11167 - 11805 (+)
Gene ID: HRGMv2_0215_106_10
Type: TC
Location: 11877 - 14078 (-)
Type: TC
Location: 11877 - 14078 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Prevotella
Species
Prevotella copri_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.