Cluster: HRGMv2_0215_CGC50
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0215
- CGC Family ID: CGCFAM_09544
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0215_104 | HRGMv2_0215_104_31 | 34064 | 36694 | + | 3.A.12.1.1 |
| pfam | HRGMv2_0215_104 | HRGMv2_0215_104_32 | 36890 | 37489 | + | LolA_2 |
| pfam | HRGMv2_0215_104 | HRGMv2_0215_104_33 | 37850 | 38932 | + | APH |
| CAZyme | HRGMv2_0215_104 | HRGMv2_0215_104_34 | 39252 | 43154 | + | GH31_18 |
Gene ID: HRGMv2_0215_104_31
Type: TC
Location: 34064 - 36694 (+)
Type: TC
Location: 34064 - 36694 (+)
Gene ID: HRGMv2_0215_104_32
Type: pfam
Location: 36890 - 37489 (+)
Type: pfam
Location: 36890 - 37489 (+)
Gene ID: HRGMv2_0215_104_33
Type: pfam
Location: 37850 - 38932 (+)
Type: pfam
Location: 37850 - 38932 (+)
Gene ID: HRGMv2_0215_104_34
Type: CAZyme
Location: 39252 - 43154 (+)
Type: CAZyme
Location: 39252 - 43154 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Prevotella
Species
Prevotella copri_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.