Cluster: HRGMv2_0215_CGC46
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0215
- CGC Family ID: CGCFAM_09543
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0215_96 | HRGMv2_0215_96_45 | 46450 | 47451 | + | GH73 |
| pfam | HRGMv2_0215_96 | HRGMv2_0215_96_46 | 47481 | 48665 | + | OmpA |
| NULL(UNKNOWN) | HRGMv2_0215_96 | HRGMv2_0215_96_47 | 48732 | 51353 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_0215_96 | HRGMv2_0215_96_48 | 51395 | 51889 | + | 9.B.154.1.2 |
Gene ID: HRGMv2_0215_96_45
Type: CAZyme
Location: 46450 - 47451 (+)
Type: CAZyme
Location: 46450 - 47451 (+)
Gene ID: HRGMv2_0215_96_46
Type: pfam
Location: 47481 - 48665 (+)
Type: pfam
Location: 47481 - 48665 (+)
Gene ID: HRGMv2_0215_96_47
Type:
Location: 48732 - 51353 (+)
Type:
Location: 48732 - 51353 (+)
Gene ID: HRGMv2_0215_96_48
Type: TC
Location: 51395 - 51889 (+)
Type: TC
Location: 51395 - 51889 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Prevotella
Species
Prevotella copri_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0215_96_45 | vegetarian > omnivore | 4.07239 | 0.01641 |
| HRGMv2_0215_96_46 | vegetarian > omnivore | 4.07062 | 0.01560 |
| HRGMv2_0215_96_47 | vegetarian > omnivore | 4.06046 | 0.02530 |
| HRGMv2_0215_96_48 | vegetarian > omnivore | 3.86352 | 0.02115 |