Cluster: HRGMv2_0215_CGC42
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0215
- CGC Family ID: CGCFAM_00523
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0215_85 | HRGMv2_0215_85_45 | 52364 | 54490 | + | GH13_8 |
| pfam | HRGMv2_0215_85 | HRGMv2_0215_85_46 | 54501 | 55604 | + | DUF6057 | DUF6057 |
| NULL(UNKNOWN) | HRGMv2_0215_85 | HRGMv2_0215_85_47 | 55609 | 56862 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_0215_85 | HRGMv2_0215_85_48 | 56888 | 58207 | + | 1.I.1.1.3 |
Gene ID: HRGMv2_0215_85_45
Type: CAZyme
Location: 52364 - 54490 (+)
Type: CAZyme
Location: 52364 - 54490 (+)
Gene ID: HRGMv2_0215_85_46
Type: pfam
Location: 54501 - 55604 (+)
Type: pfam
Location: 54501 - 55604 (+)
Gene ID: HRGMv2_0215_85_47
Type:
Location: 55609 - 56862 (+)
Type:
Location: 55609 - 56862 (+)
Gene ID: HRGMv2_0215_85_48
Type: TC
Location: 56888 - 58207 (+)
Type: TC
Location: 56888 - 58207 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Prevotella
Species
Prevotella copri_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.