Cluster: HRGMv2_0215_CGC40
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0215
- CGC Family ID: CGCFAM_02473
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0215_84 | HRGMv2_0215_84_13 | 15840 | 17798 | + | 3.A.18.1.1 |
| pfam | HRGMv2_0215_84 | HRGMv2_0215_84_14 | 18199 | 19101 | - | rve | rve_3 |
| NULL(UNKNOWN) | HRGMv2_0215_84 | HRGMv2_0215_84_15 | 19104 | 19541 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_0215_84 | HRGMv2_0215_84_16 | 19622 | 22330 | + | GH2 |
Gene ID: HRGMv2_0215_84_13
Type: TC
Location: 15840 - 17798 (+)
Type: TC
Location: 15840 - 17798 (+)
Gene ID: HRGMv2_0215_84_14
Type: pfam
Location: 18199 - 19101 (-)
Type: pfam
Location: 18199 - 19101 (-)
Gene ID: HRGMv2_0215_84_15
Type:
Location: 19104 - 19541 (-)
Type:
Location: 19104 - 19541 (-)
Gene ID: HRGMv2_0215_84_16
Type: CAZyme
Location: 19622 - 22330 (+)
Type: CAZyme
Location: 19622 - 22330 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Prevotella
Species
Prevotella copri_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0215_84_14 | vegetarian > omnivore | 2.86270 | 0.02530 |
| HRGMv2_0215_84_14 | vegetarian > vegan | 4.23823 | 0.01557 |
| HRGMv2_0215_84_15 | vegetarian > omnivore | 2.85224 | 0.02530 |
| HRGMv2_0215_84_15 | vegetarian > vegan | 4.42861 | 0.01557 |