Cluster: HRGMv2_0215_CGC4
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_0215
- CGC Family ID: CGCFAM_01566
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0215_4 | HRGMv2_0215_4_18 | 15404 | 16780 | + | 2.A.25.1.3 |
| pfam | HRGMv2_0215_4 | HRGMv2_0215_4_19 | 16801 | 17379 | - | Acetyltransf_1 | FR47 | Acetyltransf_3 | Acetyltransf_7 | Acetyltransf_10 |
| CAZyme | HRGMv2_0215_4 | HRGMv2_0215_4_20 | 18254 | 20878 | - | GH2 |
| CAZyme | HRGMv2_0215_4 | HRGMv2_0215_4_21 | 20880 | 23834 | - | GH31_4 |
| TF | HRGMv2_0215_4 | HRGMv2_0215_4_22 | 24017 | 28195 | - | HTH_AraC | HTH_AraC |
| TF | HRGMv2_0215_4 | HRGMv2_0215_4_23 | 28344 | 28982 | - | GerE |
| TC | HRGMv2_0215_4 | HRGMv2_0215_4_24 | 29085 | 31637 | - | 1.B.14.6.14 |
Gene ID: HRGMv2_0215_4_18
Type: TC
Location: 15404 - 16780 (+)
Type: TC
Location: 15404 - 16780 (+)
Gene ID: HRGMv2_0215_4_19
Type: pfam
Location: 16801 - 17379 (-)
Type: pfam
Location: 16801 - 17379 (-)
Gene ID: HRGMv2_0215_4_20
Type: CAZyme
Location: 18254 - 20878 (-)
Type: CAZyme
Location: 18254 - 20878 (-)
Gene ID: HRGMv2_0215_4_21
Type: CAZyme
Location: 20880 - 23834 (-)
Type: CAZyme
Location: 20880 - 23834 (-)
Gene ID: HRGMv2_0215_4_22
Type: TF
Location: 24017 - 28195 (-)
Type: TF
Location: 24017 - 28195 (-)
Gene ID: HRGMv2_0215_4_23
Type: TF
Location: 28344 - 28982 (-)
Type: TF
Location: 28344 - 28982 (-)
Gene ID: HRGMv2_0215_4_24
Type: TC
Location: 29085 - 31637 (-)
Type: TC
Location: 29085 - 31637 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Prevotella
Species
Prevotella copri_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.