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Cluster: HRGMv2_0215_CGC38

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0215_79 HRGMv2_0215_79_4 5161 6936 + 3.B.1.1.6
STP HRGMv2_0215_79 HRGMv2_0215_79_5 6948 7487 + HD
TC HRGMv2_0215_79 HRGMv2_0215_79_6 7702 10524 + 1.B.42.1.8
CAZyme HRGMv2_0215_79 HRGMv2_0215_79_7 10687 13143 + GH95
pfam HRGMv2_0215_79 HRGMv2_0215_79_8 13210 14946 - PIF1 | AAA_19 | AAA_22 | AAA_30
CAZyme HRGMv2_0215_79 HRGMv2_0215_79_9 14956 17502 - GT51
pfam HRGMv2_0215_79 HRGMv2_0215_79_10 17778 19256 + Fucose_iso_C
pfam HRGMv2_0215_79 HRGMv2_0215_79_11 19376 19810 + Acetyltransf_1 | FR47 | Acetyltransf_7 | Acetyltransf_9 | Acetyltransf_10
CAZyme HRGMv2_0215_79 HRGMv2_0215_79_12 19838 20674 + GH16_3
pfam HRGMv2_0215_79 HRGMv2_0215_79_13 21111 22436 + OEP | OEP
TC HRGMv2_0215_79 HRGMv2_0215_79_14 22476 23576 + 8.A.1.1.2
Gene ID: HRGMv2_0215_79_4
Type: TC
Location: 5161 - 6936 (+)
Gene ID: HRGMv2_0215_79_5
Type: STP
Location: 6948 - 7487 (+)
Gene ID: HRGMv2_0215_79_6
Type: TC
Location: 7702 - 10524 (+)
Gene ID: HRGMv2_0215_79_7
Type: CAZyme
Location: 10687 - 13143 (+)
Gene ID: HRGMv2_0215_79_8
Type: pfam
Location: 13210 - 14946 (-)
Gene ID: HRGMv2_0215_79_9
Type: CAZyme
Location: 14956 - 17502 (-)
Gene ID: HRGMv2_0215_79_10
Type: pfam
Location: 17778 - 19256 (+)
Gene ID: HRGMv2_0215_79_11
Type: pfam
Location: 19376 - 19810 (+)
Gene ID: HRGMv2_0215_79_12
Type: CAZyme
Location: 19838 - 20674 (+)
Gene ID: HRGMv2_0215_79_13
Type: pfam
Location: 21111 - 22436 (+)
Gene ID: HRGMv2_0215_79_14
Type: TC
Location: 22476 - 23576 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0215_79_11 vegetarian > vegan 3.33087 0.01557

🧭 Explore Read Mapping of CGC

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