Cluster: HRGMv2_0215_CGC37
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_0215
- CGC Family ID: CGCFAM_01481
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0215_72 | HRGMv2_0215_72_1 | 9 | 2792 | - | 1.B.14.6.1 |
| CAZyme | HRGMv2_0215_72 | HRGMv2_0215_72_2 | 2922 | 4346 | - | GH5_21 |
| TF | HRGMv2_0215_72 | HRGMv2_0215_72_3 | 4897 | 8967 | + | HTH_AraC | HTH_AraC |
| CAZyme | HRGMv2_0215_72 | HRGMv2_0215_72_4 | 9168 | 10838 | + | CBM91 | GH43_12 |
Gene ID: HRGMv2_0215_72_1
Type: TC
Location: 9 - 2792 (-)
Type: TC
Location: 9 - 2792 (-)
Gene ID: HRGMv2_0215_72_2
Type: CAZyme
Location: 2922 - 4346 (-)
Type: CAZyme
Location: 2922 - 4346 (-)
Gene ID: HRGMv2_0215_72_3
Type: TF
Location: 4897 - 8967 (+)
Type: TF
Location: 4897 - 8967 (+)
Gene ID: HRGMv2_0215_72_4
Type: CAZyme
Location: 9168 - 10838 (+)
Type: CAZyme
Location: 9168 - 10838 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Prevotella
Species
Prevotella copri_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0215_72_1 | vegetarian > omnivore | 1.36244 | 0.02530 |
| HRGMv2_0215_72_3 | vegetarian > vegan | 1.07870 | 0.01557 |