Cluster: HRGMv2_0215_CGC36
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate: pectin/galactan/beta-glucan/xylan/beta-mannan/host glycan
- Genome ID: HRGMv2_0215
- CGC Family ID: CGCFAM_00001
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0215_70 | HRGMv2_0215_70_15 | 13670 | 14899 | + | GH5_46 |
| CAZyme | HRGMv2_0215_70 | HRGMv2_0215_70_16 | 15053 | 16207 | - | GH16_3 |
| NULL(UNKNOWN) | HRGMv2_0215_70 | HRGMv2_0215_70_17 | 16297 | 17673 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | HRGMv2_0215_70 | HRGMv2_0215_70_18 | 17695 | 19218 | - | SusD_RagB | SusD-like_3 |
| TC | HRGMv2_0215_70 | HRGMv2_0215_70_19 | 19249 | 22512 | - | 1.B.14.6.1 |
Gene ID: HRGMv2_0215_70_15
Type: CAZyme
Location: 13670 - 14899 (+)
Type: CAZyme
Location: 13670 - 14899 (+)
Gene ID: HRGMv2_0215_70_16
Type: CAZyme
Location: 15053 - 16207 (-)
Type: CAZyme
Location: 15053 - 16207 (-)
Gene ID: HRGMv2_0215_70_17
Type:
Location: 16297 - 17673 (-)
Type:
Location: 16297 - 17673 (-)
Gene ID: HRGMv2_0215_70_18
Type: pfam
Location: 17695 - 19218 (-)
Type: pfam
Location: 17695 - 19218 (-)
Gene ID: HRGMv2_0215_70_19
Type: TC
Location: 19249 - 22512 (-)
Type: TC
Location: 19249 - 22512 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Prevotella
Species
Prevotella copri_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.