Cluster: HRGMv2_0215_CGC35
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_0215
- CGC Family ID: CGCFAM_00576
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0215_68 | HRGMv2_0215_68_1 | 99 | 1964 | - | GH20 |
| CAZyme | HRGMv2_0215_68 | HRGMv2_0215_68_2 | 2107 | 3384 | - | GH33 |
| pfam | HRGMv2_0215_68 | HRGMv2_0215_68_3 | 3405 | 4592 | - | GlcNAc_2-epim |
| pfam | HRGMv2_0215_68 | HRGMv2_0215_68_4 | 4618 | 5535 | - | DHDPS |
| TC | HRGMv2_0215_68 | HRGMv2_0215_68_5 | 5581 | 6816 | - | 2.A.1.14.25 |
Gene ID: HRGMv2_0215_68_1
Type: CAZyme
Location: 99 - 1964 (-)
Type: CAZyme
Location: 99 - 1964 (-)
Gene ID: HRGMv2_0215_68_2
Type: CAZyme
Location: 2107 - 3384 (-)
Type: CAZyme
Location: 2107 - 3384 (-)
Gene ID: HRGMv2_0215_68_3
Type: pfam
Location: 3405 - 4592 (-)
Type: pfam
Location: 3405 - 4592 (-)
Gene ID: HRGMv2_0215_68_4
Type: pfam
Location: 4618 - 5535 (-)
Type: pfam
Location: 4618 - 5535 (-)
Gene ID: HRGMv2_0215_68_5
Type: TC
Location: 5581 - 6816 (-)
Type: TC
Location: 5581 - 6816 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Prevotella
Species
Prevotella copri_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.