Cluster: HRGMv2_0215_CGC29
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0215
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0215_65 | HRGMv2_0215_65_31 | 33001 | 35637 | + | 1.C.105.2.12 |
| pfam | HRGMv2_0215_65 | HRGMv2_0215_65_32 | 35777 | 36547 | + | Ubie_methyltran | Methyltransf_4 | Methyltransf_25 | Methyltransf_31 |
| pfam | HRGMv2_0215_65 | HRGMv2_0215_65_33 | 36610 | 37596 | - | Fic | Virulence_RhuM |
| CAZyme | HRGMv2_0215_65 | HRGMv2_0215_65_34 | 38017 | 40371 | + | GH3 |
Gene ID: HRGMv2_0215_65_31
Type: TC
Location: 33001 - 35637 (+)
Type: TC
Location: 33001 - 35637 (+)
Gene ID: HRGMv2_0215_65_32
Type: pfam
Location: 35777 - 36547 (+)
Type: pfam
Location: 35777 - 36547 (+)
Gene ID: HRGMv2_0215_65_33
Type: pfam
Location: 36610 - 37596 (-)
Type: pfam
Location: 36610 - 37596 (-)
Gene ID: HRGMv2_0215_65_34
Type: CAZyme
Location: 38017 - 40371 (+)
Type: CAZyme
Location: 38017 - 40371 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Prevotella
Species
Prevotella copri_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0215_65_33 | vegetarian > omnivore | 1.12201 | 0.01560 |