Cluster: HRGMv2_0215_CGC26
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate: pectin/galactan/beta-glucan/xylan/beta-mannan/host glycan
- Genome ID: HRGMv2_0215
- CGC Family ID: CGCFAM_00001
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0215_56 | HRGMv2_0215_56_2 | 920 | 4552 | - | GH92 |
| CAZyme | HRGMv2_0215_56 | HRGMv2_0215_56_3 | 4582 | 7317 | - | GH92 |
| pfam | HRGMv2_0215_56 | HRGMv2_0215_56_4 | 7373 | 8032 | - | DUF4468 |
| pfam | HRGMv2_0215_56 | HRGMv2_0215_56_5 | 8132 | 9763 | - | SusD_RagB | SusD-like_3 |
| TC | HRGMv2_0215_56 | HRGMv2_0215_56_6 | 9787 | 12291 | - | 1.B.14.6.1 |
Gene ID: HRGMv2_0215_56_2
Type: CAZyme
Location: 920 - 4552 (-)
Type: CAZyme
Location: 920 - 4552 (-)
Gene ID: HRGMv2_0215_56_3
Type: CAZyme
Location: 4582 - 7317 (-)
Type: CAZyme
Location: 4582 - 7317 (-)
Gene ID: HRGMv2_0215_56_4
Type: pfam
Location: 7373 - 8032 (-)
Type: pfam
Location: 7373 - 8032 (-)
Gene ID: HRGMv2_0215_56_5
Type: pfam
Location: 8132 - 9763 (-)
Type: pfam
Location: 8132 - 9763 (-)
Gene ID: HRGMv2_0215_56_6
Type: TC
Location: 9787 - 12291 (-)
Type: TC
Location: 9787 - 12291 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Prevotella
Species
Prevotella copri_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.