Cluster: HRGMv2_0215_CGC25
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0215
- CGC Family ID: CGCFAM_09542
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0215_52 | HRGMv2_0215_52_1 | 105 | 1259 | - | GH109 |
| STP | HRGMv2_0215_52 | HRGMv2_0215_52_2 | 1331 | 1549 | + | HMA |
| TC | HRGMv2_0215_52 | HRGMv2_0215_52_3 | 1533 | 3767 | - | 3.A.7.16.1 |
| pfam | HRGMv2_0215_52 | HRGMv2_0215_52_4 | 3800 | 4564 | - | ThiF |
| TC | HRGMv2_0215_52 | HRGMv2_0215_52_5 | 4679 | 6646 | - | 2.A.72.1.3 |
Gene ID: HRGMv2_0215_52_1
Type: CAZyme
Location: 105 - 1259 (-)
Type: CAZyme
Location: 105 - 1259 (-)
Gene ID: HRGMv2_0215_52_2
Type: STP
Location: 1331 - 1549 (+)
Type: STP
Location: 1331 - 1549 (+)
Gene ID: HRGMv2_0215_52_3
Type: TC
Location: 1533 - 3767 (-)
Type: TC
Location: 1533 - 3767 (-)
Gene ID: HRGMv2_0215_52_4
Type: pfam
Location: 3800 - 4564 (-)
Type: pfam
Location: 3800 - 4564 (-)
Gene ID: HRGMv2_0215_52_5
Type: TC
Location: 4679 - 6646 (-)
Type: TC
Location: 4679 - 6646 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Prevotella
Species
Prevotella copri_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0215_52_4 | vegetarian > vegan | 1.60323 | 0.01557 |