Cluster: HRGMv2_0215_CGC2
🧬 Cluster Details
- Gene Count: 17
- CAZyme Count: 8
- Substrate: xylan
- Genome ID: HRGMv2_0215
- CGC Family ID: CGCFAM_00238
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0215_2 | HRGMv2_0215_2_3 | 2587 | 5307 | + | 1.B.14.6.1 |
| pfam | HRGMv2_0215_2 | HRGMv2_0215_2_4 | 5343 | 7151 | + | SusD_RagB | SusD-like_3 |
| pfam | HRGMv2_0215_2 | HRGMv2_0215_2_5 | 7192 | 8214 | + | BT_3987-like_N |
| CAZyme | HRGMv2_0215_2 | HRGMv2_0215_2_6 | 8250 | 10406 | + | GH10 |
| CAZyme | HRGMv2_0215_2 | HRGMv2_0215_2_7 | 10444 | 12351 | + | CE1 | CE6 |
| TC | HRGMv2_0215_2 | HRGMv2_0215_2_8 | 12610 | 15711 | + | 1.B.14.6.1 |
| pfam | HRGMv2_0215_2 | HRGMv2_0215_2_9 | 15731 | 17533 | + | SusD_RagB | TPR_8 | SusD-like_3 |
| CAZyme | HRGMv2_0215_2 | HRGMv2_0215_2_10 | 17651 | 20167 | + | GH43_2 | GH8 |
| NULL(UNKNOWN) | HRGMv2_0215_2 | HRGMv2_0215_2_11 | 20181 | 20885 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_0215_2 | HRGMv2_0215_2_12 | 20906 | 22396 | + | GH43_7 |
| CAZyme | HRGMv2_0215_2 | HRGMv2_0215_2_13 | 22447 | 25053 | + | GH3 |
| pfam | HRGMv2_0215_2 | HRGMv2_0215_2_14 | 26132 | 27763 | + | SLFN_AlbA_2 | HATPase_c_4 |
| pfam | HRGMv2_0215_2 | HRGMv2_0215_2_15 | 28053 | 29624 | + | PDDEXK_9 | AAA-ATPase_like |
| CAZyme | HRGMv2_0215_2 | HRGMv2_0215_2_16 | 29716 | 32691 | + | CBM6 | CBM91 | GH43_10 | GH43_29 |
| CAZyme | HRGMv2_0215_2 | HRGMv2_0215_2_17 | 32708 | 35101 | + | GH95 |
| CAZyme | HRGMv2_0215_2 | HRGMv2_0215_2_18 | 35214 | 37358 | + | CBM91 | GH43_10 |
| TC | HRGMv2_0215_2 | HRGMv2_0215_2_19 | 37360 | 38145 | - | 1.B.44.1.2 |
Gene ID: HRGMv2_0215_2_3
Type: TC
Location: 2587 - 5307 (+)
Type: TC
Location: 2587 - 5307 (+)
Gene ID: HRGMv2_0215_2_4
Type: pfam
Location: 5343 - 7151 (+)
Type: pfam
Location: 5343 - 7151 (+)
Gene ID: HRGMv2_0215_2_5
Type: pfam
Location: 7192 - 8214 (+)
Type: pfam
Location: 7192 - 8214 (+)
Gene ID: HRGMv2_0215_2_6
Type: CAZyme
Location: 8250 - 10406 (+)
Type: CAZyme
Location: 8250 - 10406 (+)
Gene ID: HRGMv2_0215_2_7
Type: CAZyme
Location: 10444 - 12351 (+)
Type: CAZyme
Location: 10444 - 12351 (+)
Gene ID: HRGMv2_0215_2_8
Type: TC
Location: 12610 - 15711 (+)
Type: TC
Location: 12610 - 15711 (+)
Gene ID: HRGMv2_0215_2_9
Type: pfam
Location: 15731 - 17533 (+)
Type: pfam
Location: 15731 - 17533 (+)
Gene ID: HRGMv2_0215_2_10
Type: CAZyme
Location: 17651 - 20167 (+)
Type: CAZyme
Location: 17651 - 20167 (+)
Gene ID: HRGMv2_0215_2_11
Type:
Location: 20181 - 20885 (+)
Type:
Location: 20181 - 20885 (+)
Gene ID: HRGMv2_0215_2_12
Type: CAZyme
Location: 20906 - 22396 (+)
Type: CAZyme
Location: 20906 - 22396 (+)
Gene ID: HRGMv2_0215_2_13
Type: CAZyme
Location: 22447 - 25053 (+)
Type: CAZyme
Location: 22447 - 25053 (+)
Gene ID: HRGMv2_0215_2_14
Type: pfam
Location: 26132 - 27763 (+)
Type: pfam
Location: 26132 - 27763 (+)
Gene ID: HRGMv2_0215_2_15
Type: pfam
Location: 28053 - 29624 (+)
Type: pfam
Location: 28053 - 29624 (+)
Gene ID: HRGMv2_0215_2_16
Type: CAZyme
Location: 29716 - 32691 (+)
Type: CAZyme
Location: 29716 - 32691 (+)
Gene ID: HRGMv2_0215_2_17
Type: CAZyme
Location: 32708 - 35101 (+)
Type: CAZyme
Location: 32708 - 35101 (+)
Gene ID: HRGMv2_0215_2_18
Type: CAZyme
Location: 35214 - 37358 (+)
Type: CAZyme
Location: 35214 - 37358 (+)
Gene ID: HRGMv2_0215_2_19
Type: TC
Location: 37360 - 38145 (-)
Type: TC
Location: 37360 - 38145 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Prevotella
Species
Prevotella copri_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0215_2_9 | vegetarian > vegan | 1.29959 | 0.01557 |