Cluster: HRGMv2_0215_CGC19
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_0215
- CGC Family ID: CGCFAM_00630
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0215_30 | HRGMv2_0215_30_33 | 33932 | 34915 | - | GH179 |
| pfam | HRGMv2_0215_30 | HRGMv2_0215_30_34 | 35026 | 35631 | - | MMR_HSR1 | FeoB_N |
| TC | HRGMv2_0215_30 | HRGMv2_0215_30_35 | 35719 | 37551 | - | 3.A.1.120.6 |
| pfam | HRGMv2_0215_30 | HRGMv2_0215_30_36 | 37704 | 39776 | + | ATP-synt_ab | Rho_RNA_bind |
| NULL(UNKNOWN) | HRGMv2_0215_30 | HRGMv2_0215_30_37 | 40099 | 40239 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_0215_30 | HRGMv2_0215_30_38 | 40341 | 42521 | - | GH20 |
Gene ID: HRGMv2_0215_30_33
Type: CAZyme
Location: 33932 - 34915 (-)
Type: CAZyme
Location: 33932 - 34915 (-)
Gene ID: HRGMv2_0215_30_34
Type: pfam
Location: 35026 - 35631 (-)
Type: pfam
Location: 35026 - 35631 (-)
Gene ID: HRGMv2_0215_30_35
Type: TC
Location: 35719 - 37551 (-)
Type: TC
Location: 35719 - 37551 (-)
Gene ID: HRGMv2_0215_30_36
Type: pfam
Location: 37704 - 39776 (+)
Type: pfam
Location: 37704 - 39776 (+)
Gene ID: HRGMv2_0215_30_37
Type:
Location: 40099 - 40239 (+)
Type:
Location: 40099 - 40239 (+)
Gene ID: HRGMv2_0215_30_38
Type: CAZyme
Location: 40341 - 42521 (-)
Type: CAZyme
Location: 40341 - 42521 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Prevotella
Species
Prevotella copri_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.