Cluster: HRGMv2_0215_CGC18
🧬 Cluster Details
- Gene Count: 3
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0215
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0215_27 | HRGMv2_0215_27_43 | 57217 | 58437 | - | GH27 |
| TC | HRGMv2_0215_27 | HRGMv2_0215_27_44 | 58587 | 59684 | + | 2.A.6.2.35 |
| TC | HRGMv2_0215_27 | HRGMv2_0215_27_45 | 59703 | 62888 | + | 2.A.6.2.37 |
Gene ID: HRGMv2_0215_27_43
Type: CAZyme
Location: 57217 - 58437 (-)
Type: CAZyme
Location: 57217 - 58437 (-)
Gene ID: HRGMv2_0215_27_44
Type: TC
Location: 58587 - 59684 (+)
Type: TC
Location: 58587 - 59684 (+)
Gene ID: HRGMv2_0215_27_45
Type: TC
Location: 59703 - 62888 (+)
Type: TC
Location: 59703 - 62888 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Prevotella
Species
Prevotella copri_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0215_27_44 | vegetarian > omnivore | 1.53387 | 0.02017 |
| HRGMv2_0215_27_44 | vegetarian > vegan | 1.03148 | 0.01557 |
| HRGMv2_0215_27_45 | vegetarian > omnivore | 1.63556 | 0.01839 |