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Cluster: HRGMv2_0215_CGC16

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0215_27 HRGMv2_0215_27_7 8321 11512 + 2.A.6.1.5
pfam HRGMv2_0215_27 HRGMv2_0215_27_8 11544 12818 + OEP | OEP
TC HRGMv2_0215_27 HRGMv2_0215_27_9 12919 13554 - 9.B.18.1.3
CAZyme HRGMv2_0215_27 HRGMv2_0215_27_10 13611 14420 - GT2
CAZyme HRGMv2_0215_27 HRGMv2_0215_27_11 14487 15308 - GT2
CAZyme HRGMv2_0215_27 HRGMv2_0215_27_12 15316 16131 - GT23
pfam HRGMv2_0215_27 HRGMv2_0215_27_13 16133 17284 - Glyco_tran_WbsX
TC HRGMv2_0215_27 HRGMv2_0215_27_14 17298 18353 - 9.B.183.1.5
Gene ID: HRGMv2_0215_27_7
Type: TC
Location: 8321 - 11512 (+)
Gene ID: HRGMv2_0215_27_8
Type: pfam
Location: 11544 - 12818 (+)
Gene ID: HRGMv2_0215_27_9
Type: TC
Location: 12919 - 13554 (-)
Gene ID: HRGMv2_0215_27_10
Type: CAZyme
Location: 13611 - 14420 (-)
Gene ID: HRGMv2_0215_27_11
Type: CAZyme
Location: 14487 - 15308 (-)
Gene ID: HRGMv2_0215_27_12
Type: CAZyme
Location: 15316 - 16131 (-)
Gene ID: HRGMv2_0215_27_13
Type: pfam
Location: 16133 - 17284 (-)
Gene ID: HRGMv2_0215_27_14
Type: TC
Location: 17298 - 18353 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0215_27_7 vegetarian > omnivore 1.03205 0.02017

🧭 Explore Read Mapping of CGC

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