Cluster: HRGMv2_0215_CGC14
🧬 Cluster Details
- Gene Count: 17
- CAZyme Count: 7
- Substrate:
- Genome ID: HRGMv2_0215
- CGC Family ID: CGCFAM_00034
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0215_22 | HRGMv2_0215_22_4 | 3737 | 6178 | + | GH51_2 |
| TC | HRGMv2_0215_22 | HRGMv2_0215_22_5 | 6342 | 7646 | - | 2.A.40.7.6 |
| NULL(UNKNOWN) | HRGMv2_0215_22 | HRGMv2_0215_22_6 | 7753 | 7935 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_0215_22 | HRGMv2_0215_22_7 | 7887 | 8951 | - | GH43_5 |
| CAZyme | HRGMv2_0215_22 | HRGMv2_0215_22_8 | 9090 | 10778 | - | GH43_4 |
| NULL(UNKNOWN) | HRGMv2_0215_22 | HRGMv2_0215_22_9 | 10888 | 12870 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | HRGMv2_0215_22 | HRGMv2_0215_22_10 | 12956 | 14713 | - | SusD_RagB | SusD-like_3 |
| TC | HRGMv2_0215_22 | HRGMv2_0215_22_11 | 14768 | 17971 | - | 1.B.14.6.1 |
| TF | HRGMv2_0215_22 | HRGMv2_0215_22_12 | 18291 | 21260 | - | HTH_AraC |
| CAZyme | HRGMv2_0215_22 | HRGMv2_0215_22_13 | 21380 | 23305 | - | GH13_46 |
| CAZyme | HRGMv2_0215_22 | HRGMv2_0215_22_14 | 23359 | 25353 | - | GH13_14 |
| CAZyme | HRGMv2_0215_22 | HRGMv2_0215_22_15 | 25475 | 27610 | - | GH97 |
| CAZyme | HRGMv2_0215_22 | HRGMv2_0215_22_16 | 27828 | 30506 | - | GH77 |
| TC | HRGMv2_0215_22 | HRGMv2_0215_22_17 | 30650 | 31963 | - | 2.A.2.6.2 |
| TF | HRGMv2_0215_22 | HRGMv2_0215_22_18 | 31990 | 32991 | - | LacI |
| TC | HRGMv2_0215_22 | HRGMv2_0215_22_19 | 33299 | 36394 | + | 1.B.14.6.1 |
| TC | HRGMv2_0215_22 | HRGMv2_0215_22_20 | 36413 | 38029 | + | 8.A.46.1.1 |
Gene ID: HRGMv2_0215_22_4
Type: CAZyme
Location: 3737 - 6178 (+)
Type: CAZyme
Location: 3737 - 6178 (+)
Gene ID: HRGMv2_0215_22_5
Type: TC
Location: 6342 - 7646 (-)
Type: TC
Location: 6342 - 7646 (-)
Gene ID: HRGMv2_0215_22_6
Type:
Location: 7753 - 7935 (+)
Type:
Location: 7753 - 7935 (+)
Gene ID: HRGMv2_0215_22_7
Type: CAZyme
Location: 7887 - 8951 (-)
Type: CAZyme
Location: 7887 - 8951 (-)
Gene ID: HRGMv2_0215_22_8
Type: CAZyme
Location: 9090 - 10778 (-)
Type: CAZyme
Location: 9090 - 10778 (-)
Gene ID: HRGMv2_0215_22_9
Type:
Location: 10888 - 12870 (-)
Type:
Location: 10888 - 12870 (-)
Gene ID: HRGMv2_0215_22_10
Type: pfam
Location: 12956 - 14713 (-)
Type: pfam
Location: 12956 - 14713 (-)
Gene ID: HRGMv2_0215_22_11
Type: TC
Location: 14768 - 17971 (-)
Type: TC
Location: 14768 - 17971 (-)
Gene ID: HRGMv2_0215_22_12
Type: TF
Location: 18291 - 21260 (-)
Type: TF
Location: 18291 - 21260 (-)
Gene ID: HRGMv2_0215_22_13
Type: CAZyme
Location: 21380 - 23305 (-)
Type: CAZyme
Location: 21380 - 23305 (-)
Gene ID: HRGMv2_0215_22_14
Type: CAZyme
Location: 23359 - 25353 (-)
Type: CAZyme
Location: 23359 - 25353 (-)
Gene ID: HRGMv2_0215_22_15
Type: CAZyme
Location: 25475 - 27610 (-)
Type: CAZyme
Location: 25475 - 27610 (-)
Gene ID: HRGMv2_0215_22_16
Type: CAZyme
Location: 27828 - 30506 (-)
Type: CAZyme
Location: 27828 - 30506 (-)
Gene ID: HRGMv2_0215_22_17
Type: TC
Location: 30650 - 31963 (-)
Type: TC
Location: 30650 - 31963 (-)
Gene ID: HRGMv2_0215_22_18
Type: TF
Location: 31990 - 32991 (-)
Type: TF
Location: 31990 - 32991 (-)
Gene ID: HRGMv2_0215_22_19
Type: TC
Location: 33299 - 36394 (+)
Type: TC
Location: 33299 - 36394 (+)
Gene ID: HRGMv2_0215_22_20
Type: TC
Location: 36413 - 38029 (+)
Type: TC
Location: 36413 - 38029 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Prevotella
Species
Prevotella copri_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0215_22_10 | vegetarian > omnivore | 1.19509 | 0.02530 |
| HRGMv2_0215_22_10 | vegetarian > vegan | 1.10207 | 0.01557 |