Cluster: HRGMv2_0215_CGC10
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 4
- Substrate: arabinogalactan
- Genome ID: HRGMv2_0215
- CGC Family ID: CGCFAM_00225
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0215_17 | HRGMv2_0215_17_7 | 8050 | 10524 | - | GH127 |
| CAZyme | HRGMv2_0215_17 | HRGMv2_0215_17_8 | 10531 | 12990 | - | CBM32 | GH43_34 |
| CAZyme | HRGMv2_0215_17 | HRGMv2_0215_17_9 | 13013 | 14998 | - | GH97 |
| CAZyme | HRGMv2_0215_17 | HRGMv2_0215_17_10 | 15277 | 18177 | + | GH146 |
| TC | HRGMv2_0215_17 | HRGMv2_0215_17_11 | 18485 | 21691 | + | 1.B.14.6.1 |
Gene ID: HRGMv2_0215_17_7
Type: CAZyme
Location: 8050 - 10524 (-)
Type: CAZyme
Location: 8050 - 10524 (-)
Gene ID: HRGMv2_0215_17_8
Type: CAZyme
Location: 10531 - 12990 (-)
Type: CAZyme
Location: 10531 - 12990 (-)
Gene ID: HRGMv2_0215_17_9
Type: CAZyme
Location: 13013 - 14998 (-)
Type: CAZyme
Location: 13013 - 14998 (-)
Gene ID: HRGMv2_0215_17_10
Type: CAZyme
Location: 15277 - 18177 (+)
Type: CAZyme
Location: 15277 - 18177 (+)
Gene ID: HRGMv2_0215_17_11
Type: TC
Location: 18485 - 21691 (+)
Type: TC
Location: 18485 - 21691 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Prevotella
Species
Prevotella copri_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0215_17_10 | vegetarian > vegan | 1.21329 | 0.01557 |
| HRGMv2_0215_17_11 | vegetarian > vegan | 1.02750 | 0.01557 |