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Cluster: HRGMv2_0207_CGC18

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_0207_19 HRGMv2_0207_19_17 16286 17692 - GH125
pfam HRGMv2_0207_19 HRGMv2_0207_19_18 17697 19091 - PDZ | PDZ_2 | DUF4136 | PDZ_6 | PDZ_6
TC HRGMv2_0207_19 HRGMv2_0207_19_19 19187 19714 - 2.A.51.1.6
TC HRGMv2_0207_19 HRGMv2_0207_19_20 19711 20301 - 2.A.51.1.6
pfam HRGMv2_0207_19 HRGMv2_0207_19_21 20353 21204 - Asp_Glu_race
TC HRGMv2_0207_19 HRGMv2_0207_19_22 21204 21578 - 9.B.55.1.2
pfam HRGMv2_0207_19 HRGMv2_0207_19_23 21605 22570 - Formyl_trans_N | Formyl_trans_C
TC HRGMv2_0207_19 HRGMv2_0207_19_24 22548 24335 - 2.A.49.6.4
pfam HRGMv2_0207_19 HRGMv2_0207_19_25 24337 24921 - Sua5_yciO_yrdC
pfam HRGMv2_0207_19 HRGMv2_0207_19_26 25232 26101 + Bro-N
TC HRGMv2_0207_19 HRGMv2_0207_19_27 26731 29295 + 3.A.12.1.1
Gene ID: HRGMv2_0207_19_17
Type: CAZyme
Location: 16286 - 17692 (-)
Gene ID: HRGMv2_0207_19_18
Type: pfam
Location: 17697 - 19091 (-)
Gene ID: HRGMv2_0207_19_19
Type: TC
Location: 19187 - 19714 (-)
Gene ID: HRGMv2_0207_19_20
Type: TC
Location: 19711 - 20301 (-)
Gene ID: HRGMv2_0207_19_21
Type: pfam
Location: 20353 - 21204 (-)
Gene ID: HRGMv2_0207_19_22
Type: TC
Location: 21204 - 21578 (-)
Gene ID: HRGMv2_0207_19_23
Type: pfam
Location: 21605 - 22570 (-)
Gene ID: HRGMv2_0207_19_24
Type: TC
Location: 22548 - 24335 (-)
Gene ID: HRGMv2_0207_19_25
Type: pfam
Location: 24337 - 24921 (-)
Gene ID: HRGMv2_0207_19_26
Type: pfam
Location: 25232 - 26101 (+)
Gene ID: HRGMv2_0207_19_27
Type: TC
Location: 26731 - 29295 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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