Cluster: HRGMv2_0207_CGC12
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_0207
- CGC Family ID: CGCFAM_00709
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0207_6 | HRGMv2_0207_6_67 | 85619 | 86251 | - | 2.A.123.4.1 |
| CAZyme | HRGMv2_0207_6 | HRGMv2_0207_6_68 | 86266 | 87003 | - | GT2 |
| CAZyme | HRGMv2_0207_6 | HRGMv2_0207_6_69 | 87012 | 88604 | - | GT83 |
| pfam | HRGMv2_0207_6 | HRGMv2_0207_6_70 | 88832 | 89941 | - | DDE_Tnp_ISL3 | HTH_Tnp_ISL3 | Zn_ribbon_ISL3 |
| pfam | HRGMv2_0207_6 | HRGMv2_0207_6_71 | 90200 | 91357 | - | GHMP_kinases_N | GHMP_kinases_C | GalKase_gal_bdg |
| TC | HRGMv2_0207_6 | HRGMv2_0207_6_72 | 91365 | 92807 | - | 2.A.1.7.11 |
Gene ID: HRGMv2_0207_6_67
Type: TC
Location: 85619 - 86251 (-)
Type: TC
Location: 85619 - 86251 (-)
Gene ID: HRGMv2_0207_6_68
Type: CAZyme
Location: 86266 - 87003 (-)
Type: CAZyme
Location: 86266 - 87003 (-)
Gene ID: HRGMv2_0207_6_69
Type: CAZyme
Location: 87012 - 88604 (-)
Type: CAZyme
Location: 87012 - 88604 (-)
Gene ID: HRGMv2_0207_6_70
Type: pfam
Location: 88832 - 89941 (-)
Type: pfam
Location: 88832 - 89941 (-)
Gene ID: HRGMv2_0207_6_71
Type: pfam
Location: 90200 - 91357 (-)
Type: pfam
Location: 90200 - 91357 (-)
Gene ID: HRGMv2_0207_6_72
Type: TC
Location: 91365 - 92807 (-)
Type: TC
Location: 91365 - 92807 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Porphyromonadaceae
Genus
Porphyromonas_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.