Cluster: HRGMv2_0192_CGC9
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0192
- CGC Family ID: CGCFAM_02538
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0192_42 | HRGMv2_0192_42_8 | 10923 | 12620 | - | GH13_38 |
| pfam | HRGMv2_0192_42 | HRGMv2_0192_42_9 | 12624 | 13541 | - | Patatin |
| TC | HRGMv2_0192_42 | HRGMv2_0192_42_10 | 13553 | 15007 | - | 9.B.126.2.2 |
| NULL(UNKNOWN) | HRGMv2_0192_42 | HRGMv2_0192_42_11 | 15507 | 15719 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_0192_42 | HRGMv2_0192_42_12 | 15873 | 16895 | - | 2.A.19.5.2 |
Gene ID: HRGMv2_0192_42_8
Type: CAZyme
Location: 10923 - 12620 (-)
Type: CAZyme
Location: 10923 - 12620 (-)
Gene ID: HRGMv2_0192_42_9
Type: pfam
Location: 12624 - 13541 (-)
Type: pfam
Location: 12624 - 13541 (-)
Gene ID: HRGMv2_0192_42_10
Type: TC
Location: 13553 - 15007 (-)
Type: TC
Location: 13553 - 15007 (-)
Gene ID: HRGMv2_0192_42_11
Type:
Location: 15507 - 15719 (+)
Type:
Location: 15507 - 15719 (+)
Gene ID: HRGMv2_0192_42_12
Type: TC
Location: 15873 - 16895 (-)
Type: TC
Location: 15873 - 16895 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Porphyromonadaceae
Genus
Porphyromonas
Species
Porphyromonas sp900548415
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.