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Cluster: HRGMv2_0192_CGC4

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_0192_8 HRGMv2_0192_8_1 855 2171 + GH3
STP HRGMv2_0192_8 HRGMv2_0192_8_2 2200 3228 + Aminotran_1_2
pfam HRGMv2_0192_8 HRGMv2_0192_8_3 3357 3779 + RseC_MucC
TC HRGMv2_0192_8 HRGMv2_0192_8_4 3796 4731 + 3.D.6.1.2
TC HRGMv2_0192_8 HRGMv2_0192_8_5 4741 6093 + 3.D.6.1.2
TC HRGMv2_0192_8 HRGMv2_0192_8_6 6146 7135 + 3.D.6.1.2
TC HRGMv2_0192_8 HRGMv2_0192_8_7 7132 8280 + 3.D.6.1.3
TC HRGMv2_0192_8 HRGMv2_0192_8_8 8290 8880 + 3.D.6.1.2
TC HRGMv2_0192_8 HRGMv2_0192_8_9 8945 9526 + 3.D.6.1.2
Gene ID: HRGMv2_0192_8_1
Type: CAZyme
Location: 855 - 2171 (+)
Gene ID: HRGMv2_0192_8_2
Type: STP
Location: 2200 - 3228 (+)
Gene ID: HRGMv2_0192_8_3
Type: pfam
Location: 3357 - 3779 (+)
Gene ID: HRGMv2_0192_8_4
Type: TC
Location: 3796 - 4731 (+)
Gene ID: HRGMv2_0192_8_5
Type: TC
Location: 4741 - 6093 (+)
Gene ID: HRGMv2_0192_8_6
Type: TC
Location: 6146 - 7135 (+)
Gene ID: HRGMv2_0192_8_7
Type: TC
Location: 7132 - 8280 (+)
Gene ID: HRGMv2_0192_8_8
Type: TC
Location: 8290 - 8880 (+)
Gene ID: HRGMv2_0192_8_9
Type: TC
Location: 8945 - 9526 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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