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Cluster: HRGMv2_0186_CGC8

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0186_6 HRGMv2_0186_6_10 17569 18801 - 9.B.156.3.1
CAZyme HRGMv2_0186_6 HRGMv2_0186_6_11 19292 20452 - GT4
pfam HRGMv2_0186_6 HRGMv2_0186_6_12 20698 21912 - Phosphodiest
pfam HRGMv2_0186_6 HRGMv2_0186_6_13 22106 23272 - AhpC-TSA | Redoxin | Thioredoxin_8 | DUF4369
TC HRGMv2_0186_6 HRGMv2_0186_6_14 23274 23651 - 1.A.43.1.13
pfam HRGMv2_0186_6 HRGMv2_0186_6_15 24193 25350 - PepSY | PepSY_TM
pfam HRGMv2_0186_6 HRGMv2_0186_6_16 25459 26892 - DUF4374
TC HRGMv2_0186_6 HRGMv2_0186_6_17 26952 29306 - 1.B.14.3.6
Gene ID: HRGMv2_0186_6_10
Type: TC
Location: 17569 - 18801 (-)
Gene ID: HRGMv2_0186_6_11
Type: CAZyme
Location: 19292 - 20452 (-)
Gene ID: HRGMv2_0186_6_12
Type: pfam
Location: 20698 - 21912 (-)
Gene ID: HRGMv2_0186_6_13
Type: pfam
Location: 22106 - 23272 (-)
Gene ID: HRGMv2_0186_6_14
Type: TC
Location: 23274 - 23651 (-)
Gene ID: HRGMv2_0186_6_15
Type: pfam
Location: 24193 - 25350 (-)
Gene ID: HRGMv2_0186_6_16
Type: pfam
Location: 25459 - 26892 (-)
Gene ID: HRGMv2_0186_6_17
Type: TC
Location: 26952 - 29306 (-)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacteroidota
→
Class
Bacteroidia
→
Order
Bacteroidales
→
Family
Bacteroidaceae
→
Genus
Prevotella
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0186_6_11 vegetarian > vegan 1.14031 0.00565
HRGMv2_0186_6_15 vegetarian > vegan 1.23258 0.00565

🧭 Explore Read Mapping of CGC

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