Cluster: HRGMv2_0186_CGC30
🧬 Cluster Details
- Gene Count: 10
- CAZyme Count: 4
- Substrate:
- Genome ID: HRGMv2_0186
- CGC Family ID: CGCFAM_00544
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0186_49 | HRGMv2_0186_49_1 | 349 | 2685 | + | GH95 |
| NULL(UNKNOWN) | HRGMv2_0186_49 | HRGMv2_0186_49_2 | 2784 | 2924 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_0186_49 | HRGMv2_0186_49_3 | 4203 | 7301 | + | 1.B.14.6.1 |
| pfam | HRGMv2_0186_49 | HRGMv2_0186_49_4 | 7350 | 8912 | + | SusD_RagB | SusD-like_3 |
| pfam | HRGMv2_0186_49 | HRGMv2_0186_49_5 | 9103 | 10887 | + | FG-GAP_3 | FG-GAP_3 | FG-GAP_3 | FG-GAP_3 | FG-GAP_3 |
| CAZyme | HRGMv2_0186_49 | HRGMv2_0186_49_6 | 11090 | 13450 | + | GH36 |
| NULL(UNKNOWN) | HRGMv2_0186_49 | HRGMv2_0186_49_7 | 13340 | 13555 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TF | HRGMv2_0186_49 | HRGMv2_0186_49_8 | 13585 | 17589 | + | HTH_AraC |
| CAZyme | HRGMv2_0186_49 | HRGMv2_0186_49_9 | 17712 | 19652 | + | CE20 | CE20 |
| CAZyme | HRGMv2_0186_49 | HRGMv2_0186_49_10 | 19729 | 21870 | + | GH36 |
Gene ID: HRGMv2_0186_49_1
Type: CAZyme
Location: 349 - 2685 (+)
Type: CAZyme
Location: 349 - 2685 (+)
Gene ID: HRGMv2_0186_49_2
Type:
Location: 2784 - 2924 (-)
Type:
Location: 2784 - 2924 (-)
Gene ID: HRGMv2_0186_49_3
Type: TC
Location: 4203 - 7301 (+)
Type: TC
Location: 4203 - 7301 (+)
Gene ID: HRGMv2_0186_49_4
Type: pfam
Location: 7350 - 8912 (+)
Type: pfam
Location: 7350 - 8912 (+)
Gene ID: HRGMv2_0186_49_5
Type: pfam
Location: 9103 - 10887 (+)
Type: pfam
Location: 9103 - 10887 (+)
Gene ID: HRGMv2_0186_49_6
Type: CAZyme
Location: 11090 - 13450 (+)
Type: CAZyme
Location: 11090 - 13450 (+)
Gene ID: HRGMv2_0186_49_7
Type:
Location: 13340 - 13555 (-)
Type:
Location: 13340 - 13555 (-)
Gene ID: HRGMv2_0186_49_8
Type: TF
Location: 13585 - 17589 (+)
Type: TF
Location: 13585 - 17589 (+)
Gene ID: HRGMv2_0186_49_9
Type: CAZyme
Location: 17712 - 19652 (+)
Type: CAZyme
Location: 17712 - 19652 (+)
Gene ID: HRGMv2_0186_49_10
Type: CAZyme
Location: 19729 - 21870 (+)
Type: CAZyme
Location: 19729 - 21870 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Prevotella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0186_49_3 | vegetarian > omnivore | 3.90754 | 0.01285 |
| HRGMv2_0186_49_4 | vegetarian > omnivore | 4.15322 | 0.02734 |
| HRGMv2_0186_49_5 | vegetarian > omnivore | 5.68377 | 0.01285 |
| HRGMv2_0186_49_6 | vegan > omnivore | 3.25294 | 0.02677 |
| HRGMv2_0186_49_6 | vegetarian > omnivore | 3.27935 | 0.01285 |
| HRGMv2_0186_49_8 | vegan > omnivore | 3.98804 | 0.02677 |
| HRGMv2_0186_49_8 | vegetarian > omnivore | 3.96596 | 0.02734 |
| HRGMv2_0186_49_9 | vegetarian > omnivore | 2.98527 | 0.01285 |
| HRGMv2_0186_49_10 | vegan > omnivore | 1.47802 | 0.02677 |