Cluster: HRGMv2_0186_CGC12
🧬 Cluster Details
- Gene Count: 18
- CAZyme Count: 13
- Substrate:
- Genome ID: HRGMv2_0186
- CGC Family ID: CGCFAM_00217
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0186_10 | HRGMv2_0186_10_19 | 17980 | 21129 | + | GH2 |
| NULL(UNKNOWN) | HRGMv2_0186_10 | HRGMv2_0186_10_20 | 21391 | 21492 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_0186_10 | HRGMv2_0186_10_21 | 22342 | 25617 | + | 1.B.14.6.1 |
| pfam | HRGMv2_0186_10 | HRGMv2_0186_10_22 | 25667 | 27721 | + | SusD_RagB | SusD-like_3 |
| CAZyme | HRGMv2_0186_10 | HRGMv2_0186_10_23 | 27920 | 28774 | + | GH16_3 |
| CAZyme | HRGMv2_0186_10 | HRGMv2_0186_10_24 | 29205 | 30341 | + | GH43_24 |
| TF | HRGMv2_0186_10 | HRGMv2_0186_10_25 | 30521 | 34468 | + | HTH_AraC |
| CAZyme | HRGMv2_0186_10 | HRGMv2_0186_10_26 | 34537 | 35787 | + | GH154 |
| CAZyme | HRGMv2_0186_10 | HRGMv2_0186_10_27 | 35804 | 37120 | + | PL42 |
| CAZyme | HRGMv2_0186_10 | HRGMv2_0186_10_28 | 37211 | 38335 | + | GH105 |
| NULL(UNKNOWN) | HRGMv2_0186_10 | HRGMv2_0186_10_29 | 38344 | 38442 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_0186_10 | HRGMv2_0186_10_30 | 38439 | 39992 | + | GH30_4 |
| CAZyme | HRGMv2_0186_10 | HRGMv2_0186_10_31 | 40044 | 42395 | + | GH35 |
| CAZyme | HRGMv2_0186_10 | HRGMv2_0186_10_32 | 42582 | 44504 | + | GH43_19 | GH43_34 |
| CAZyme | HRGMv2_0186_10 | HRGMv2_0186_10_33 | 44563 | 45588 | + | GH43_17 |
| CAZyme | HRGMv2_0186_10 | HRGMv2_0186_10_34 | 45674 | 48175 | + | GH51_2 |
| CAZyme | HRGMv2_0186_10 | HRGMv2_0186_10_35 | 48524 | 50491 | + | GH127 |
| CAZyme | HRGMv2_0186_10 | HRGMv2_0186_10_36 | 50523 | 52772 | + | CE1 |
Gene ID: HRGMv2_0186_10_19
Type: CAZyme
Location: 17980 - 21129 (+)
Type: CAZyme
Location: 17980 - 21129 (+)
Gene ID: HRGMv2_0186_10_20
Type:
Location: 21391 - 21492 (-)
Type:
Location: 21391 - 21492 (-)
Gene ID: HRGMv2_0186_10_21
Type: TC
Location: 22342 - 25617 (+)
Type: TC
Location: 22342 - 25617 (+)
Gene ID: HRGMv2_0186_10_22
Type: pfam
Location: 25667 - 27721 (+)
Type: pfam
Location: 25667 - 27721 (+)
Gene ID: HRGMv2_0186_10_23
Type: CAZyme
Location: 27920 - 28774 (+)
Type: CAZyme
Location: 27920 - 28774 (+)
Gene ID: HRGMv2_0186_10_24
Type: CAZyme
Location: 29205 - 30341 (+)
Type: CAZyme
Location: 29205 - 30341 (+)
Gene ID: HRGMv2_0186_10_25
Type: TF
Location: 30521 - 34468 (+)
Type: TF
Location: 30521 - 34468 (+)
Gene ID: HRGMv2_0186_10_26
Type: CAZyme
Location: 34537 - 35787 (+)
Type: CAZyme
Location: 34537 - 35787 (+)
Gene ID: HRGMv2_0186_10_27
Type: CAZyme
Location: 35804 - 37120 (+)
Type: CAZyme
Location: 35804 - 37120 (+)
Gene ID: HRGMv2_0186_10_28
Type: CAZyme
Location: 37211 - 38335 (+)
Type: CAZyme
Location: 37211 - 38335 (+)
Gene ID: HRGMv2_0186_10_29
Type:
Location: 38344 - 38442 (+)
Type:
Location: 38344 - 38442 (+)
Gene ID: HRGMv2_0186_10_30
Type: CAZyme
Location: 38439 - 39992 (+)
Type: CAZyme
Location: 38439 - 39992 (+)
Gene ID: HRGMv2_0186_10_31
Type: CAZyme
Location: 40044 - 42395 (+)
Type: CAZyme
Location: 40044 - 42395 (+)
Gene ID: HRGMv2_0186_10_32
Type: CAZyme
Location: 42582 - 44504 (+)
Type: CAZyme
Location: 42582 - 44504 (+)
Gene ID: HRGMv2_0186_10_33
Type: CAZyme
Location: 44563 - 45588 (+)
Type: CAZyme
Location: 44563 - 45588 (+)
Gene ID: HRGMv2_0186_10_34
Type: CAZyme
Location: 45674 - 48175 (+)
Type: CAZyme
Location: 45674 - 48175 (+)
Gene ID: HRGMv2_0186_10_35
Type: CAZyme
Location: 48524 - 50491 (+)
Type: CAZyme
Location: 48524 - 50491 (+)
Gene ID: HRGMv2_0186_10_36
Type: CAZyme
Location: 50523 - 52772 (+)
Type: CAZyme
Location: 50523 - 52772 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Prevotella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.