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Cluster: HRGMv2_0180_CGC5

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0180_4 HRGMv2_0180_4_18 25850 28930 - 1.B.14.6.1
pfam HRGMv2_0180_4 HRGMv2_0180_4_19 28975 30327 - TIG
TF HRGMv2_0180_4 HRGMv2_0180_4_20 30611 34744 + HTH_AraC
CAZyme HRGMv2_0180_4 HRGMv2_0180_4_21 34817 36778 - GH97
STP HRGMv2_0180_4 HRGMv2_0180_4_22 37083 38282 + ACT | PALP
pfam HRGMv2_0180_4 HRGMv2_0180_4_23 38349 38723 + Ribonuc_L-PSP
TC HRGMv2_0180_4 HRGMv2_0180_4_24 38777 39553 + 3.A.1.13.2
Gene ID: HRGMv2_0180_4_18
Type: TC
Location: 25850 - 28930 (-)
Gene ID: HRGMv2_0180_4_19
Type: pfam
Location: 28975 - 30327 (-)
Gene ID: HRGMv2_0180_4_20
Type: TF
Location: 30611 - 34744 (+)
Gene ID: HRGMv2_0180_4_21
Type: CAZyme
Location: 34817 - 36778 (-)
Gene ID: HRGMv2_0180_4_22
Type: STP
Location: 37083 - 38282 (+)
Gene ID: HRGMv2_0180_4_23
Type: pfam
Location: 38349 - 38723 (+)
Gene ID: HRGMv2_0180_4_24
Type: TC
Location: 38777 - 39553 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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