Cluster: HRGMv2_0180_CGC17
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_0180
- CGC Family ID: CGCFAM_04803
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0180_27 | HRGMv2_0180_27_1 | 191 | 1369 | + | GT1 |
| sulfatase | HRGMv2_0180_27 | HRGMv2_0180_27_2 | 1308 | 2294 | + | S1_20 |
| CAZyme | HRGMv2_0180_27 | HRGMv2_0180_27_3 | 2344 | 3528 | + | GT4 |
| pfam | HRGMv2_0180_27 | HRGMv2_0180_27_4 | 3605 | 4630 | + | LPG_synthase_TM |
| pfam | HRGMv2_0180_27 | HRGMv2_0180_27_5 | 4620 | 5660 | - | OprB |
| TC | HRGMv2_0180_27 | HRGMv2_0180_27_6 | 5915 | 8581 | - | 3.A.3.4.1 |
Gene ID: HRGMv2_0180_27_1
Type: CAZyme
Location: 191 - 1369 (+)
Type: CAZyme
Location: 191 - 1369 (+)
Gene ID: HRGMv2_0180_27_2
Type: sulfatase
Location: 1308 - 2294 (+)
Type: sulfatase
Location: 1308 - 2294 (+)
Gene ID: HRGMv2_0180_27_3
Type: CAZyme
Location: 2344 - 3528 (+)
Type: CAZyme
Location: 2344 - 3528 (+)
Gene ID: HRGMv2_0180_27_4
Type: pfam
Location: 3605 - 4630 (+)
Type: pfam
Location: 3605 - 4630 (+)
Gene ID: HRGMv2_0180_27_5
Type: pfam
Location: 4620 - 5660 (-)
Type: pfam
Location: 4620 - 5660 (-)
Gene ID: HRGMv2_0180_27_6
Type: TC
Location: 5915 - 8581 (-)
Type: TC
Location: 5915 - 8581 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Prevotella
Species
Prevotella sp934202525
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0180_27_1 | vegetarian > vegan | 2.07765 | 0.00933 |
| HRGMv2_0180_27_2 | vegetarian > vegan | 1.88068 | 0.00933 |