Cluster: HRGMv2_0180_CGC15
🧬 Cluster Details
- Gene Count: 10
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_0180
- CGC Family ID: CGCFAM_01486
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0180_17 | HRGMv2_0180_17_7 | 5372 | 6946 | + | GH28 |
| TC | HRGMv2_0180_17 | HRGMv2_0180_17_8 | 7404 | 10691 | + | 1.B.14.6.1 |
| TC | HRGMv2_0180_17 | HRGMv2_0180_17_9 | 10726 | 12774 | + | 8.A.46.1.3 |
| NULL(UNKNOWN) | HRGMv2_0180_17 | HRGMv2_0180_17_10 | 12800 | 15253 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | HRGMv2_0180_17 | HRGMv2_0180_17_11 | 15785 | 16393 | - | RNase_HII |
| CAZyme | HRGMv2_0180_17 | HRGMv2_0180_17_12 | 16634 | 17965 | + | GH28 |
| TF | HRGMv2_0180_17 | HRGMv2_0180_17_13 | 18131 | 22327 | - | HTH_AraC |
| NULL(UNKNOWN) | HRGMv2_0180_17 | HRGMv2_0180_17_14 | 22698 | 22808 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_0180_17 | HRGMv2_0180_17_15 | 22917 | 24914 | - | 8.A.46.1.3 |
| TC | HRGMv2_0180_17 | HRGMv2_0180_17_16 | 24943 | 27939 | - | 1.B.14.6.1 |
Gene ID: HRGMv2_0180_17_7
Type: CAZyme
Location: 5372 - 6946 (+)
Type: CAZyme
Location: 5372 - 6946 (+)
Gene ID: HRGMv2_0180_17_8
Type: TC
Location: 7404 - 10691 (+)
Type: TC
Location: 7404 - 10691 (+)
Gene ID: HRGMv2_0180_17_9
Type: TC
Location: 10726 - 12774 (+)
Type: TC
Location: 10726 - 12774 (+)
Gene ID: HRGMv2_0180_17_10
Type:
Location: 12800 - 15253 (+)
Type:
Location: 12800 - 15253 (+)
Gene ID: HRGMv2_0180_17_11
Type: pfam
Location: 15785 - 16393 (-)
Type: pfam
Location: 15785 - 16393 (-)
Gene ID: HRGMv2_0180_17_12
Type: CAZyme
Location: 16634 - 17965 (+)
Type: CAZyme
Location: 16634 - 17965 (+)
Gene ID: HRGMv2_0180_17_13
Type: TF
Location: 18131 - 22327 (-)
Type: TF
Location: 18131 - 22327 (-)
Gene ID: HRGMv2_0180_17_14
Type:
Location: 22698 - 22808 (+)
Type:
Location: 22698 - 22808 (+)
Gene ID: HRGMv2_0180_17_15
Type: TC
Location: 22917 - 24914 (-)
Type: TC
Location: 22917 - 24914 (-)
Gene ID: HRGMv2_0180_17_16
Type: TC
Location: 24943 - 27939 (-)
Type: TC
Location: 24943 - 27939 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Prevotella
Species
Prevotella sp934202525
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0180_17_12 | vegetarian > omnivore | 1.64921 | 0.03200 |
| HRGMv2_0180_17_12 | vegetarian > vegan | 4.76491 | 0.00933 |
| HRGMv2_0180_17_13 | vegetarian > omnivore | 1.51191 | 0.03200 |
| HRGMv2_0180_17_13 | vegetarian > vegan | 4.76864 | 0.00933 |
| HRGMv2_0180_17_15 | vegetarian > omnivore | 1.24153 | 0.03200 |
| HRGMv2_0180_17_15 | vegetarian > vegan | 4.49315 | 0.00933 |
| HRGMv2_0180_17_16 | vegetarian > vegan | 2.96077 | 0.00933 |