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Cluster: HRGMv2_0180_CGC13

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0180_15 HRGMv2_0180_15_2 539 1249 - 3.A.1.124.5
pfam HRGMv2_0180_15 HRGMv2_0180_15_3 1286 2686 - DUF5687
CAZyme HRGMv2_0180_15 HRGMv2_0180_15_4 2966 3928 - GH43_1
CAZyme HRGMv2_0180_15 HRGMv2_0180_15_5 3975 5093 - GH10
TC HRGMv2_0180_15 HRGMv2_0180_15_6 5113 6564 - 2.A.2.3.2
pfam HRGMv2_0180_15 HRGMv2_0180_15_7 6615 7817 - Lipase_GDSL | Lipase_GDSL_2
TF HRGMv2_0180_15 HRGMv2_0180_15_8 8069 11989 + HTH_AraC
CAZyme HRGMv2_0180_15 HRGMv2_0180_15_9 12073 14079 + GH67
CAZyme HRGMv2_0180_15 HRGMv2_0180_15_10 14072 15718 + GH35
TC HRGMv2_0180_15 HRGMv2_0180_15_11 15969 19058 + 1.B.14.6.1
Gene ID: HRGMv2_0180_15_2
Type: TC
Location: 539 - 1249 (-)
Gene ID: HRGMv2_0180_15_3
Type: pfam
Location: 1286 - 2686 (-)
Gene ID: HRGMv2_0180_15_4
Type: CAZyme
Location: 2966 - 3928 (-)
Gene ID: HRGMv2_0180_15_5
Type: CAZyme
Location: 3975 - 5093 (-)
Gene ID: HRGMv2_0180_15_6
Type: TC
Location: 5113 - 6564 (-)
Gene ID: HRGMv2_0180_15_7
Type: pfam
Location: 6615 - 7817 (-)
Gene ID: HRGMv2_0180_15_8
Type: TF
Location: 8069 - 11989 (+)
Gene ID: HRGMv2_0180_15_9
Type: CAZyme
Location: 12073 - 14079 (+)
Gene ID: HRGMv2_0180_15_10
Type: CAZyme
Location: 14072 - 15718 (+)
Gene ID: HRGMv2_0180_15_11
Type: TC
Location: 15969 - 19058 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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