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Cluster: HRGMv2_0177_CGC2

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0177_9 HRGMv2_0177_9_30 43383 46415 - 2.A.6.2.37
TC HRGMv2_0177_9 HRGMv2_0177_9_31 46557 47615 - 2.A.6.2.18
CAZyme HRGMv2_0177_9 HRGMv2_0177_9_32 47737 50043 - GH65
TC HRGMv2_0177_9 HRGMv2_0177_9_33 50189 51502 - 2.A.2.6.2
TF HRGMv2_0177_9 HRGMv2_0177_9_34 51693 52703 - LacI
STP HRGMv2_0177_9 HRGMv2_0177_9_35 53086 53412 + AraC_binding
TC HRGMv2_0177_9 HRGMv2_0177_9_36 53749 56718 + 1.B.14.6.1
TC HRGMv2_0177_9 HRGMv2_0177_9_37 56732 58369 + 8.A.46.1.1
pfam HRGMv2_0177_9 HRGMv2_0177_9_38 58407 59849 + SusF_SusE
CAZyme HRGMv2_0177_9 HRGMv2_0177_9_39 59888 62740 + GH13_10
CAZyme HRGMv2_0177_9 HRGMv2_0177_9_40 62873 65269 - GT51
Gene ID: HRGMv2_0177_9_30
Type: TC
Location: 43383 - 46415 (-)
Gene ID: HRGMv2_0177_9_31
Type: TC
Location: 46557 - 47615 (-)
Gene ID: HRGMv2_0177_9_32
Type: CAZyme
Location: 47737 - 50043 (-)
Gene ID: HRGMv2_0177_9_33
Type: TC
Location: 50189 - 51502 (-)
Gene ID: HRGMv2_0177_9_34
Type: TF
Location: 51693 - 52703 (-)
Gene ID: HRGMv2_0177_9_35
Type: STP
Location: 53086 - 53412 (+)
Gene ID: HRGMv2_0177_9_36
Type: TC
Location: 53749 - 56718 (+)
Gene ID: HRGMv2_0177_9_37
Type: TC
Location: 56732 - 58369 (+)
Gene ID: HRGMv2_0177_9_38
Type: pfam
Location: 58407 - 59849 (+)
Gene ID: HRGMv2_0177_9_39
Type: CAZyme
Location: 59888 - 62740 (+)
Gene ID: HRGMv2_0177_9_40
Type: CAZyme
Location: 62873 - 65269 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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