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Cluster: HRGMv2_0175_CGC48

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_0175_15 HRGMv2_0175_15_20 33136 35673 + CBM67 | GH78
TC HRGMv2_0175_15 HRGMv2_0175_15_21 35791 38937 + 1.B.14.6.1
pfam HRGMv2_0175_15 HRGMv2_0175_15_22 38952 40634 + SusD_RagB | SusD-like_3
CAZyme HRGMv2_0175_15 HRGMv2_0175_15_23 40649 43051 + GH2
pfam HRGMv2_0175_15 HRGMv2_0175_15_24 43056 44027 + ROK
STP HRGMv2_0175_15 HRGMv2_0175_15_25 44038 44616 + SIS
CAZyme HRGMv2_0175_15 HRGMv2_0175_15_26 44642 46222 + GH173
NULL(UNKNOWN) HRGMv2_0175_15 HRGMv2_0175_15_27 46245 47930 + NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_0175_15 HRGMv2_0175_15_28 48044 49165 + 2.A.1.7.17
CAZyme HRGMv2_0175_15 HRGMv2_0175_15_29 49223 51298 + GH36
CAZyme HRGMv2_0175_15 HRGMv2_0175_15_30 51463 53553 + GH36
pfam HRGMv2_0175_15 HRGMv2_0175_15_31 53646 54734 + Exo_endo_phos
TF HRGMv2_0175_15 HRGMv2_0175_15_32 54766 55311 - GerE
CAZyme HRGMv2_0175_15 HRGMv2_0175_15_33 55342 56151 - GH16_3
pfam HRGMv2_0175_15 HRGMv2_0175_15_34 56373 57902 - SusD-like | SusD-like_2
TC HRGMv2_0175_15 HRGMv2_0175_15_35 57922 61281 - 1.B.14.6.2
Gene ID: HRGMv2_0175_15_20
Type: CAZyme
Location: 33136 - 35673 (+)
Gene ID: HRGMv2_0175_15_21
Type: TC
Location: 35791 - 38937 (+)
Gene ID: HRGMv2_0175_15_22
Type: pfam
Location: 38952 - 40634 (+)
Gene ID: HRGMv2_0175_15_23
Type: CAZyme
Location: 40649 - 43051 (+)
Gene ID: HRGMv2_0175_15_24
Type: pfam
Location: 43056 - 44027 (+)
Gene ID: HRGMv2_0175_15_25
Type: STP
Location: 44038 - 44616 (+)
Gene ID: HRGMv2_0175_15_26
Type: CAZyme
Location: 44642 - 46222 (+)
Gene ID: HRGMv2_0175_15_27
Type:
Location: 46245 - 47930 (+)
Gene ID: HRGMv2_0175_15_28
Type: TC
Location: 48044 - 49165 (+)
Gene ID: HRGMv2_0175_15_29
Type: CAZyme
Location: 49223 - 51298 (+)
Gene ID: HRGMv2_0175_15_30
Type: CAZyme
Location: 51463 - 53553 (+)
Gene ID: HRGMv2_0175_15_31
Type: pfam
Location: 53646 - 54734 (+)
Gene ID: HRGMv2_0175_15_32
Type: TF
Location: 54766 - 55311 (-)
Gene ID: HRGMv2_0175_15_33
Type: CAZyme
Location: 55342 - 56151 (-)
Gene ID: HRGMv2_0175_15_34
Type: pfam
Location: 56373 - 57902 (-)
Gene ID: HRGMv2_0175_15_35
Type: TC
Location: 57922 - 61281 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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