Cluster: HRGMv2_0156_CGC99
🧬 Cluster Details
- Gene Count: 9
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_0156
- CGC Family ID: CGCFAM_08850
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0156_1 | HRGMv2_0156_1_4144 | 5431698 | 5433134 | + | 2.A.1.1.55 |
| STP | HRGMv2_0156_1 | HRGMv2_0156_1_4145 | 5433293 | 5436574 | + | TPR_1 |
| CAZyme | HRGMv2_0156_1 | HRGMv2_0156_1_4146 | 5436651 | 5438267 | + | CBM61 | GH53 |
| NULL(UNKNOWN) | HRGMv2_0156_1 | HRGMv2_0156_1_4147 | 5438280 | 5439650 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_0156_1 | HRGMv2_0156_1_4148 | 5439664 | 5442756 | + | 1.B.14.6.1 |
| TC | HRGMv2_0156_1 | HRGMv2_0156_1_4149 | 5442769 | 5444280 | + | 8.A.46.1.1 |
| pfam | HRGMv2_0156_1 | HRGMv2_0156_1_4150 | 5444305 | 5444979 | + | Lipase_GDSL_lke |
| CAZyme | HRGMv2_0156_1 | HRGMv2_0156_1_4151 | 5445006 | 5447354 | + | GH35 |
| CAZyme | HRGMv2_0156_1 | HRGMv2_0156_1_4152 | 5447366 | 5449867 | + | GH147 |
Gene ID: HRGMv2_0156_1_4144
Type: TC
Location: 5431698 - 5433134 (+)
Type: TC
Location: 5431698 - 5433134 (+)
Gene ID: HRGMv2_0156_1_4145
Type: STP
Location: 5433293 - 5436574 (+)
Type: STP
Location: 5433293 - 5436574 (+)
Gene ID: HRGMv2_0156_1_4146
Type: CAZyme
Location: 5436651 - 5438267 (+)
Type: CAZyme
Location: 5436651 - 5438267 (+)
Gene ID: HRGMv2_0156_1_4147
Type:
Location: 5438280 - 5439650 (+)
Type:
Location: 5438280 - 5439650 (+)
Gene ID: HRGMv2_0156_1_4148
Type: TC
Location: 5439664 - 5442756 (+)
Type: TC
Location: 5439664 - 5442756 (+)
Gene ID: HRGMv2_0156_1_4149
Type: TC
Location: 5442769 - 5444280 (+)
Type: TC
Location: 5442769 - 5444280 (+)
Gene ID: HRGMv2_0156_1_4150
Type: pfam
Location: 5444305 - 5444979 (+)
Type: pfam
Location: 5444305 - 5444979 (+)
Gene ID: HRGMv2_0156_1_4151
Type: CAZyme
Location: 5445006 - 5447354 (+)
Type: CAZyme
Location: 5445006 - 5447354 (+)
Gene ID: HRGMv2_0156_1_4152
Type: CAZyme
Location: 5447366 - 5449867 (+)
Type: CAZyme
Location: 5447366 - 5449867 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides ovatus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0156_1_4145 | vegetarian > omnivore | 1.15398 | 0.00153 |
| HRGMv2_0156_1_4147 | vegan > omnivore | 1.02806 | 0.00026 |
| HRGMv2_0156_1_4150 | vegan > omnivore | 1.05990 | 0.00026 |
| HRGMv2_0156_1_4150 | vegetarian > omnivore | 1.37937 | 0.00153 |