Cluster: HRGMv2_0156_CGC95
🧬 Cluster Details
- Gene Count: 19
- CAZyme Count: 9
- Substrate:
- Genome ID: HRGMv2_0156
- CGC Family ID: CGCFAM_02285
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0156_1 | HRGMv2_0156_1_3952 | 5157044 | 5159221 | + | GH92 |
| STP | HRGMv2_0156_1 | HRGMv2_0156_1_3953 | 5159379 | 5160422 | - | FecR |
| TF | HRGMv2_0156_1 | HRGMv2_0156_1_3954 | 5160476 | 5161063 | - | GerE |
| TC | HRGMv2_0156_1 | HRGMv2_0156_1_3955 | 5161392 | 5164955 | + | 1.B.14.6.1 |
| pfam | HRGMv2_0156_1 | HRGMv2_0156_1_3956 | 5164967 | 5166745 | + | SusD_RagB | SusD-like_3 |
| CAZyme | HRGMv2_0156_1 | HRGMv2_0156_1_3957 | 5166759 | 5168045 | + | GH43_17 |
| pfam | HRGMv2_0156_1 | HRGMv2_0156_1_3958 | 5168058 | 5169581 | + | TIG | BACON |
| CAZyme | HRGMv2_0156_1 | HRGMv2_0156_1_3959 | 5169620 | 5170693 | + | GH5_13 |
| CAZyme | HRGMv2_0156_1 | HRGMv2_0156_1_3960 | 5170701 | 5173232 | + | GH20 |
| TF | HRGMv2_0156_1 | HRGMv2_0156_1_3961 | 5173345 | 5173935 | + | GerE |
| STP | HRGMv2_0156_1 | HRGMv2_0156_1_3962 | 5174007 | 5175020 | + | FecR |
| TC | HRGMv2_0156_1 | HRGMv2_0156_1_3963 | 5175288 | 5178653 | + | 1.B.14.6.1 |
| pfam | HRGMv2_0156_1 | HRGMv2_0156_1_3964 | 5178664 | 5180319 | + | SusD_RagB | SusD-like_3 |
| CAZyme | HRGMv2_0156_1 | HRGMv2_0156_1_3965 | 5180351 | 5181349 | + | GH43_18 |
| NULL(UNKNOWN) | HRGMv2_0156_1 | HRGMv2_0156_1_3966 | 5181376 | 5183424 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_0156_1 | HRGMv2_0156_1_3967 | 5183560 | 5185671 | + | GH42 |
| CAZyme | HRGMv2_0156_1 | HRGMv2_0156_1_3968 | 5185688 | 5187967 | + | GH3 |
| CAZyme | HRGMv2_0156_1 | HRGMv2_0156_1_3969 | 5188036 | 5189133 | + | GH5_13 |
| CAZyme | HRGMv2_0156_1 | HRGMv2_0156_1_3970 | 5189249 | 5191243 | + | GH97 |
Gene ID: HRGMv2_0156_1_3952
Type: CAZyme
Location: 5157044 - 5159221 (+)
Type: CAZyme
Location: 5157044 - 5159221 (+)
Gene ID: HRGMv2_0156_1_3953
Type: STP
Location: 5159379 - 5160422 (-)
Type: STP
Location: 5159379 - 5160422 (-)
Gene ID: HRGMv2_0156_1_3954
Type: TF
Location: 5160476 - 5161063 (-)
Type: TF
Location: 5160476 - 5161063 (-)
Gene ID: HRGMv2_0156_1_3955
Type: TC
Location: 5161392 - 5164955 (+)
Type: TC
Location: 5161392 - 5164955 (+)
Gene ID: HRGMv2_0156_1_3956
Type: pfam
Location: 5164967 - 5166745 (+)
Type: pfam
Location: 5164967 - 5166745 (+)
Gene ID: HRGMv2_0156_1_3957
Type: CAZyme
Location: 5166759 - 5168045 (+)
Type: CAZyme
Location: 5166759 - 5168045 (+)
Gene ID: HRGMv2_0156_1_3958
Type: pfam
Location: 5168058 - 5169581 (+)
Type: pfam
Location: 5168058 - 5169581 (+)
Gene ID: HRGMv2_0156_1_3959
Type: CAZyme
Location: 5169620 - 5170693 (+)
Type: CAZyme
Location: 5169620 - 5170693 (+)
Gene ID: HRGMv2_0156_1_3960
Type: CAZyme
Location: 5170701 - 5173232 (+)
Type: CAZyme
Location: 5170701 - 5173232 (+)
Gene ID: HRGMv2_0156_1_3961
Type: TF
Location: 5173345 - 5173935 (+)
Type: TF
Location: 5173345 - 5173935 (+)
Gene ID: HRGMv2_0156_1_3962
Type: STP
Location: 5174007 - 5175020 (+)
Type: STP
Location: 5174007 - 5175020 (+)
Gene ID: HRGMv2_0156_1_3963
Type: TC
Location: 5175288 - 5178653 (+)
Type: TC
Location: 5175288 - 5178653 (+)
Gene ID: HRGMv2_0156_1_3964
Type: pfam
Location: 5178664 - 5180319 (+)
Type: pfam
Location: 5178664 - 5180319 (+)
Gene ID: HRGMv2_0156_1_3965
Type: CAZyme
Location: 5180351 - 5181349 (+)
Type: CAZyme
Location: 5180351 - 5181349 (+)
Gene ID: HRGMv2_0156_1_3966
Type:
Location: 5181376 - 5183424 (+)
Type:
Location: 5181376 - 5183424 (+)
Gene ID: HRGMv2_0156_1_3967
Type: CAZyme
Location: 5183560 - 5185671 (+)
Type: CAZyme
Location: 5183560 - 5185671 (+)
Gene ID: HRGMv2_0156_1_3968
Type: CAZyme
Location: 5185688 - 5187967 (+)
Type: CAZyme
Location: 5185688 - 5187967 (+)
Gene ID: HRGMv2_0156_1_3969
Type: CAZyme
Location: 5188036 - 5189133 (+)
Type: CAZyme
Location: 5188036 - 5189133 (+)
Gene ID: HRGMv2_0156_1_3970
Type: CAZyme
Location: 5189249 - 5191243 (+)
Type: CAZyme
Location: 5189249 - 5191243 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides ovatus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0156_1_3954 | vegetarian > omnivore | 1.00088 | 0.00153 |
| HRGMv2_0156_1_3955 | vegan > omnivore | 1.65860 | 0.00026 |
| HRGMv2_0156_1_3955 | vegetarian > omnivore | 1.44854 | 0.00153 |
| HRGMv2_0156_1_3957 | vegan > omnivore | 2.73126 | 0.00026 |
| HRGMv2_0156_1_3957 | vegetarian > omnivore | 2.54916 | 0.00153 |
| HRGMv2_0156_1_3958 | vegan > omnivore | 3.13045 | 0.00026 |
| HRGMv2_0156_1_3958 | vegetarian > omnivore | 2.47667 | 0.00153 |
| HRGMv2_0156_1_3967 | vegan > omnivore | 1.12188 | 0.00026 |