Cluster: HRGMv2_0156_CGC89
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 4
- Substrate:
- Genome ID: HRGMv2_0156
- CGC Family ID: CGCFAM_05946
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0156_1 | HRGMv2_0156_1_3668 | 4838208 | 4839647 | + | CE20 |
| CAZyme | HRGMv2_0156_1 | HRGMv2_0156_1_3669 | 4839654 | 4841876 | + | GH3 |
| CAZyme | HRGMv2_0156_1 | HRGMv2_0156_1_3670 | 4841902 | 4844100 | + | GH92 |
| CAZyme | HRGMv2_0156_1 | HRGMv2_0156_1_3671 | 4844112 | 4846109 | + | GH97 |
| STP | HRGMv2_0156_1 | HRGMv2_0156_1_3672 | 4846404 | 4847393 | + | PfkB |
| TC | HRGMv2_0156_1 | HRGMv2_0156_1_3673 | 4847440 | 4849128 | + | 9.B.174.1.2 |
| STP | HRGMv2_0156_1 | HRGMv2_0156_1_3674 | 4849270 | 4850469 | - | HATPase_c | HisKA |
| pfam | HRGMv2_0156_1 | HRGMv2_0156_1_3675 | 4850653 | 4852071 | + | AdoHcyase_NAD | 2-Hacid_dh_C | AdoHcyase | KARI_N |
| TC | HRGMv2_0156_1 | HRGMv2_0156_1_3676 | 4852223 | 4854751 | + | 9.B.144.1.4 |
| NULL(UNKNOWN) | HRGMv2_0156_1 | HRGMv2_0156_1_3677 | 4854970 | 4855566 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | HRGMv2_0156_1 | HRGMv2_0156_1_3678 | 4855958 | 4857289 | + | OEP | OEP |
| TC | HRGMv2_0156_1 | HRGMv2_0156_1_3679 | 4857312 | 4858403 | + | 8.A.1.1.2 |
Gene ID: HRGMv2_0156_1_3668
Type: CAZyme
Location: 4838208 - 4839647 (+)
Type: CAZyme
Location: 4838208 - 4839647 (+)
Gene ID: HRGMv2_0156_1_3669
Type: CAZyme
Location: 4839654 - 4841876 (+)
Type: CAZyme
Location: 4839654 - 4841876 (+)
Gene ID: HRGMv2_0156_1_3670
Type: CAZyme
Location: 4841902 - 4844100 (+)
Type: CAZyme
Location: 4841902 - 4844100 (+)
Gene ID: HRGMv2_0156_1_3671
Type: CAZyme
Location: 4844112 - 4846109 (+)
Type: CAZyme
Location: 4844112 - 4846109 (+)
Gene ID: HRGMv2_0156_1_3672
Type: STP
Location: 4846404 - 4847393 (+)
Type: STP
Location: 4846404 - 4847393 (+)
Gene ID: HRGMv2_0156_1_3673
Type: TC
Location: 4847440 - 4849128 (+)
Type: TC
Location: 4847440 - 4849128 (+)
Gene ID: HRGMv2_0156_1_3674
Type: STP
Location: 4849270 - 4850469 (-)
Type: STP
Location: 4849270 - 4850469 (-)
Gene ID: HRGMv2_0156_1_3675
Type: pfam
Location: 4850653 - 4852071 (+)
Type: pfam
Location: 4850653 - 4852071 (+)
Gene ID: HRGMv2_0156_1_3676
Type: TC
Location: 4852223 - 4854751 (+)
Type: TC
Location: 4852223 - 4854751 (+)
Gene ID: HRGMv2_0156_1_3677
Type:
Location: 4854970 - 4855566 (-)
Type:
Location: 4854970 - 4855566 (-)
Gene ID: HRGMv2_0156_1_3678
Type: pfam
Location: 4855958 - 4857289 (+)
Type: pfam
Location: 4855958 - 4857289 (+)
Gene ID: HRGMv2_0156_1_3679
Type: TC
Location: 4857312 - 4858403 (+)
Type: TC
Location: 4857312 - 4858403 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides ovatus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0156_1_3677 | vegan > omnivore | 1.43753 | 0.00026 |
| HRGMv2_0156_1_3677 | vegetarian > omnivore | 1.10225 | 0.00153 |