Cluster: HRGMv2_0156_CGC84
🧬 Cluster Details
- Gene Count: 16
- CAZyme Count: 9
- Substrate:
- Genome ID: HRGMv2_0156
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0156_1 | HRGMv2_0156_1_3456 | 4540607 | 4542526 | - | CE20 | CE20 |
| pfam | HRGMv2_0156_1 | HRGMv2_0156_1_3457 | 4542545 | 4543324 | - | DUF5040 |
| CAZyme | HRGMv2_0156_1 | HRGMv2_0156_1_3458 | 4543328 | 4546060 | - | CBM67 | GH78 |
| TC | HRGMv2_0156_1 | HRGMv2_0156_1_3459 | 4546020 | 4547414 | - | 2.A.2.3.6 |
| CAZyme | HRGMv2_0156_1 | HRGMv2_0156_1_3460 | 4547425 | 4548594 | - | GH130_1 |
| CAZyme | HRGMv2_0156_1 | HRGMv2_0156_1_3461 | 4548621 | 4549982 | - | GH140 |
| CAZyme | HRGMv2_0156_1 | HRGMv2_0156_1_3462 | 4549987 | 4551027 | - | GH5_5 |
| CAZyme | HRGMv2_0156_1 | HRGMv2_0156_1_3463 | 4551038 | 4553608 | - | GH2 |
| CAZyme | HRGMv2_0156_1 | HRGMv2_0156_1_3464 | 4553627 | 4554712 | - | GH5_5 |
| pfam | HRGMv2_0156_1 | HRGMv2_0156_1_3465 | 4554772 | 4555944 | - | TIG | SGBP_B_XBD |
| pfam | HRGMv2_0156_1 | HRGMv2_0156_1_3466 | 4555973 | 4557736 | - | SusD_RagB | SusD-like_3 |
| TC | HRGMv2_0156_1 | HRGMv2_0156_1_3467 | 4557749 | 4561000 | - | 1.B.14.6.1 |
| CAZyme | HRGMv2_0156_1 | HRGMv2_0156_1_3468 | 4561120 | 4562097 | - | GH5_2 |
| CAZyme | HRGMv2_0156_1 | HRGMv2_0156_1_3469 | 4562409 | 4564406 | + | GH172 |
| TC | HRGMv2_0156_1 | HRGMv2_0156_1_3470 | 4564403 | 4565392 | - | 2.A.19.5.2 |
| TC | HRGMv2_0156_1 | HRGMv2_0156_1_3471 | 4565520 | 4567370 | + | 1.A.23.1.4 |
Gene ID: HRGMv2_0156_1_3456
Type: CAZyme
Location: 4540607 - 4542526 (-)
Type: CAZyme
Location: 4540607 - 4542526 (-)
Gene ID: HRGMv2_0156_1_3457
Type: pfam
Location: 4542545 - 4543324 (-)
Type: pfam
Location: 4542545 - 4543324 (-)
Gene ID: HRGMv2_0156_1_3458
Type: CAZyme
Location: 4543328 - 4546060 (-)
Type: CAZyme
Location: 4543328 - 4546060 (-)
Gene ID: HRGMv2_0156_1_3459
Type: TC
Location: 4546020 - 4547414 (-)
Type: TC
Location: 4546020 - 4547414 (-)
Gene ID: HRGMv2_0156_1_3460
Type: CAZyme
Location: 4547425 - 4548594 (-)
Type: CAZyme
Location: 4547425 - 4548594 (-)
Gene ID: HRGMv2_0156_1_3461
Type: CAZyme
Location: 4548621 - 4549982 (-)
Type: CAZyme
Location: 4548621 - 4549982 (-)
Gene ID: HRGMv2_0156_1_3462
Type: CAZyme
Location: 4549987 - 4551027 (-)
Type: CAZyme
Location: 4549987 - 4551027 (-)
Gene ID: HRGMv2_0156_1_3463
Type: CAZyme
Location: 4551038 - 4553608 (-)
Type: CAZyme
Location: 4551038 - 4553608 (-)
Gene ID: HRGMv2_0156_1_3464
Type: CAZyme
Location: 4553627 - 4554712 (-)
Type: CAZyme
Location: 4553627 - 4554712 (-)
Gene ID: HRGMv2_0156_1_3465
Type: pfam
Location: 4554772 - 4555944 (-)
Type: pfam
Location: 4554772 - 4555944 (-)
Gene ID: HRGMv2_0156_1_3466
Type: pfam
Location: 4555973 - 4557736 (-)
Type: pfam
Location: 4555973 - 4557736 (-)
Gene ID: HRGMv2_0156_1_3467
Type: TC
Location: 4557749 - 4561000 (-)
Type: TC
Location: 4557749 - 4561000 (-)
Gene ID: HRGMv2_0156_1_3468
Type: CAZyme
Location: 4561120 - 4562097 (-)
Type: CAZyme
Location: 4561120 - 4562097 (-)
Gene ID: HRGMv2_0156_1_3469
Type: CAZyme
Location: 4562409 - 4564406 (+)
Type: CAZyme
Location: 4562409 - 4564406 (+)
Gene ID: HRGMv2_0156_1_3470
Type: TC
Location: 4564403 - 4565392 (-)
Type: TC
Location: 4564403 - 4565392 (-)
Gene ID: HRGMv2_0156_1_3471
Type: TC
Location: 4565520 - 4567370 (+)
Type: TC
Location: 4565520 - 4567370 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides ovatus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0156_1_3456 | vegan > omnivore | 1.27618 | 0.00026 |
| HRGMv2_0156_1_3457 | vegan > omnivore | 1.88265 | 0.00026 |
| HRGMv2_0156_1_3458 | vegan > omnivore | 1.05212 | 0.00026 |
| HRGMv2_0156_1_3461 | vegan > omnivore | 1.37240 | 0.00026 |
| HRGMv2_0156_1_3464 | vegan > omnivore | 1.20426 | 0.00026 |
| HRGMv2_0156_1_3466 | vegan > omnivore | 1.16013 | 0.00026 |
| HRGMv2_0156_1_3467 | vegan > omnivore | 1.13584 | 0.00026 |
| HRGMv2_0156_1_3468 | vegan > omnivore | 1.65922 | 0.00026 |