Cluster: HRGMv2_0156_CGC83
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 8
- Substrate: beta-glucan
- Genome ID: HRGMv2_0156
- CGC Family ID: CGCFAM_00101
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0156_1 | HRGMv2_0156_1_3440 | 4507412 | 4509772 | - | GH3 |
| CAZyme | HRGMv2_0156_1 | HRGMv2_0156_1_3441 | 4510057 | 4511646 | + | CBM91 | GH43_12 |
| CAZyme | HRGMv2_0156_1 | HRGMv2_0156_1_3442 | 4511815 | 4513395 | + | CBM91 | GH43_12 |
| CAZyme | HRGMv2_0156_1 | HRGMv2_0156_1_3443 | 4513568 | 4515076 | + | GH5_4 |
| TC | HRGMv2_0156_1 | HRGMv2_0156_1_3444 | 4515102 | 4518275 | + | 1.B.14.6.1 |
| pfam | HRGMv2_0156_1 | HRGMv2_0156_1_3445 | 4518299 | 4519927 | + | SusD_RagB | SusD-like_3 |
| pfam | HRGMv2_0156_1 | HRGMv2_0156_1_3446 | 4519941 | 4521410 | + | TIG | SGBP_B_XBD |
| CAZyme | HRGMv2_0156_1 | HRGMv2_0156_1_3447 | 4521477 | 4523240 | + | GH9 |
| TF | HRGMv2_0156_1 | HRGMv2_0156_1_3448 | 4523326 | 4527345 | + | HTH_AraC |
| CAZyme | HRGMv2_0156_1 | HRGMv2_0156_1_3449 | 4527495 | 4530353 | + | GH31_4 |
| CAZyme | HRGMv2_0156_1 | HRGMv2_0156_1_3450 | 4530400 | 4532928 | + | GH2 |
| CAZyme | HRGMv2_0156_1 | HRGMv2_0156_1_3451 | 4532951 | 4535179 | + | GH3 |
| TC | HRGMv2_0156_1 | HRGMv2_0156_1_3452 | 4535335 | 4536912 | - | 9.B.174.1.1 |
Gene ID: HRGMv2_0156_1_3440
Type: CAZyme
Location: 4507412 - 4509772 (-)
Type: CAZyme
Location: 4507412 - 4509772 (-)
Gene ID: HRGMv2_0156_1_3441
Type: CAZyme
Location: 4510057 - 4511646 (+)
Type: CAZyme
Location: 4510057 - 4511646 (+)
Gene ID: HRGMv2_0156_1_3442
Type: CAZyme
Location: 4511815 - 4513395 (+)
Type: CAZyme
Location: 4511815 - 4513395 (+)
Gene ID: HRGMv2_0156_1_3443
Type: CAZyme
Location: 4513568 - 4515076 (+)
Type: CAZyme
Location: 4513568 - 4515076 (+)
Gene ID: HRGMv2_0156_1_3444
Type: TC
Location: 4515102 - 4518275 (+)
Type: TC
Location: 4515102 - 4518275 (+)
Gene ID: HRGMv2_0156_1_3445
Type: pfam
Location: 4518299 - 4519927 (+)
Type: pfam
Location: 4518299 - 4519927 (+)
Gene ID: HRGMv2_0156_1_3446
Type: pfam
Location: 4519941 - 4521410 (+)
Type: pfam
Location: 4519941 - 4521410 (+)
Gene ID: HRGMv2_0156_1_3447
Type: CAZyme
Location: 4521477 - 4523240 (+)
Type: CAZyme
Location: 4521477 - 4523240 (+)
Gene ID: HRGMv2_0156_1_3448
Type: TF
Location: 4523326 - 4527345 (+)
Type: TF
Location: 4523326 - 4527345 (+)
Gene ID: HRGMv2_0156_1_3449
Type: CAZyme
Location: 4527495 - 4530353 (+)
Type: CAZyme
Location: 4527495 - 4530353 (+)
Gene ID: HRGMv2_0156_1_3450
Type: CAZyme
Location: 4530400 - 4532928 (+)
Type: CAZyme
Location: 4530400 - 4532928 (+)
Gene ID: HRGMv2_0156_1_3451
Type: CAZyme
Location: 4532951 - 4535179 (+)
Type: CAZyme
Location: 4532951 - 4535179 (+)
Gene ID: HRGMv2_0156_1_3452
Type: TC
Location: 4535335 - 4536912 (-)
Type: TC
Location: 4535335 - 4536912 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides ovatus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0156_1_3441 | vegan > omnivore | 1.69956 | 0.00026 |
| HRGMv2_0156_1_3443 | vegan > omnivore | 1.75182 | 0.00026 |
| HRGMv2_0156_1_3444 | vegan > omnivore | 1.94685 | 0.00026 |
| HRGMv2_0156_1_3445 | vegan > omnivore | 3.23677 | 0.00026 |
| HRGMv2_0156_1_3445 | vegetarian > omnivore | 1.80821 | 0.00153 |
| HRGMv2_0156_1_3446 | vegetarian > omnivore | 1.48638 | 0.00153 |
| HRGMv2_0156_1_3446 | vegan > omnivore | 2.89376 | 0.00026 |
| HRGMv2_0156_1_3447 | vegan > omnivore | 1.69243 | 0.00026 |
| HRGMv2_0156_1_3448 | vegan > omnivore | 1.15922 | 0.00026 |