Cluster: HRGMv2_0156_CGC82
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 4
- Substrate:
- Genome ID: HRGMv2_0156
- CGC Family ID: CGCFAM_09203
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0156_1 | HRGMv2_0156_1_3420 | 4468781 | 4469743 | + | GH18 |
| TF | HRGMv2_0156_1 | HRGMv2_0156_1_3421 | 4469861 | 4473979 | - | HTH_AraC |
| NULL(UNKNOWN) | HRGMv2_0156_1 | HRGMv2_0156_1_3422 | 4473976 | 4474083 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_0156_1 | HRGMv2_0156_1_3423 | 4474194 | 4477301 | + | 1.B.14.6.1 |
| TC | HRGMv2_0156_1 | HRGMv2_0156_1_3424 | 4477317 | 4479167 | + | 8.A.46.1.5 |
| pfam | HRGMv2_0156_1 | HRGMv2_0156_1_3425 | 4479180 | 4479854 | + | DUF3823 | DUF3823_C |
| CAZyme | HRGMv2_0156_1 | HRGMv2_0156_1_3426 | 4479932 | 4480930 | + | GH43_34 |
| CAZyme | HRGMv2_0156_1 | HRGMv2_0156_1_3427 | 4481015 | 4482607 | + | GH30_4 |
| TF | HRGMv2_0156_1 | HRGMv2_0156_1_3428 | 4482830 | 4486897 | + | HTH_AraC |
| TC | HRGMv2_0156_1 | HRGMv2_0156_1_3429 | 4487054 | 4490254 | + | 1.B.14.6.1 |
| sulfatase | HRGMv2_0156_1 | HRGMv2_0156_1_3430 | 4490267 | 4491796 | + | S1_27 |
| TC | HRGMv2_0156_1 | HRGMv2_0156_1_3431 | 4491849 | 4492874 | + | 9.A.25.1.1 |
| CAZyme | HRGMv2_0156_1 | HRGMv2_0156_1_3432 | 4492914 | 4494086 | + | GH105 |
Gene ID: HRGMv2_0156_1_3420
Type: CAZyme
Location: 4468781 - 4469743 (+)
Type: CAZyme
Location: 4468781 - 4469743 (+)
Gene ID: HRGMv2_0156_1_3421
Type: TF
Location: 4469861 - 4473979 (-)
Type: TF
Location: 4469861 - 4473979 (-)
Gene ID: HRGMv2_0156_1_3422
Type:
Location: 4473976 - 4474083 (-)
Type:
Location: 4473976 - 4474083 (-)
Gene ID: HRGMv2_0156_1_3423
Type: TC
Location: 4474194 - 4477301 (+)
Type: TC
Location: 4474194 - 4477301 (+)
Gene ID: HRGMv2_0156_1_3424
Type: TC
Location: 4477317 - 4479167 (+)
Type: TC
Location: 4477317 - 4479167 (+)
Gene ID: HRGMv2_0156_1_3425
Type: pfam
Location: 4479180 - 4479854 (+)
Type: pfam
Location: 4479180 - 4479854 (+)
Gene ID: HRGMv2_0156_1_3426
Type: CAZyme
Location: 4479932 - 4480930 (+)
Type: CAZyme
Location: 4479932 - 4480930 (+)
Gene ID: HRGMv2_0156_1_3427
Type: CAZyme
Location: 4481015 - 4482607 (+)
Type: CAZyme
Location: 4481015 - 4482607 (+)
Gene ID: HRGMv2_0156_1_3428
Type: TF
Location: 4482830 - 4486897 (+)
Type: TF
Location: 4482830 - 4486897 (+)
Gene ID: HRGMv2_0156_1_3429
Type: TC
Location: 4487054 - 4490254 (+)
Type: TC
Location: 4487054 - 4490254 (+)
Gene ID: HRGMv2_0156_1_3430
Type: sulfatase
Location: 4490267 - 4491796 (+)
Type: sulfatase
Location: 4490267 - 4491796 (+)
Gene ID: HRGMv2_0156_1_3431
Type: TC
Location: 4491849 - 4492874 (+)
Type: TC
Location: 4491849 - 4492874 (+)
Gene ID: HRGMv2_0156_1_3432
Type: CAZyme
Location: 4492914 - 4494086 (+)
Type: CAZyme
Location: 4492914 - 4494086 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides ovatus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0156_1_3428 | vegan > omnivore | 1.17506 | 0.00026 |
| HRGMv2_0156_1_3429 | vegan > omnivore | 1.30391 | 0.00026 |
| HRGMv2_0156_1_3430 | vegetarian > omnivore | 1.49666 | 0.00153 |
| HRGMv2_0156_1_3430 | vegan > omnivore | 1.67504 | 0.00026 |
| HRGMv2_0156_1_3431 | vegetarian > omnivore | 1.86214 | 0.00153 |
| HRGMv2_0156_1_3431 | vegan > omnivore | 2.17496 | 0.00026 |
| HRGMv2_0156_1_3432 | vegetarian > omnivore | 1.30619 | 0.00153 |
| HRGMv2_0156_1_3432 | vegan > omnivore | 1.67136 | 0.00026 |