dbCAN HGM

Cluster: HRGMv2_0156_CGC80

Cluster Details
Gene Composition
Taxonomic Lineage
Gene level Read Mapping
Explore Read Mapping

🧬 Cluster Details

Gene Count: 17
CAZyme Count: 8
Substrate: alginate
Genome ID: HRGMv2_0156
CGC Family ID: CGCFAM_00331
Continent: Asia
Source Study: Ma et al., 2024 →

Gene Type	Contig ID	Protein ID	Start	Stop	Direction	Protein Family
TC	HRGMv2_0156_1	HRGMv2_0156_1_3350	4355805	4358963	-	1.B.14.6.1
TF	HRGMv2_0156_1	HRGMv2_0156_1_3351	4359195	4363229	+	HTH_AraC
CAZyme	HRGMv2_0156_1	HRGMv2_0156_1_3352	4363860	4365737	+	GH29
CAZyme	HRGMv2_0156_1	HRGMv2_0156_1_3353	4365773	4367467	+	GH123
CAZyme	HRGMv2_0156_1	HRGMv2_0156_1_3354	4367483	4369738	+	GH95
CAZyme	HRGMv2_0156_1	HRGMv2_0156_1_3355	4369750	4373928	+	GH29 \| PL30
CAZyme	HRGMv2_0156_1	HRGMv2_0156_1_3356	4373997	4376612	+	GH3
TF	HRGMv2_0156_1	HRGMv2_0156_1_3357	4376785	4377504	-	GntR
TC	HRGMv2_0156_1	HRGMv2_0156_1_3358	4377745	4380900	+	1.B.14.6.1
TC	HRGMv2_0156_1	HRGMv2_0156_1_3359	4380914	4382431	+	8.A.46.1.5
pfam	HRGMv2_0156_1	HRGMv2_0156_1_3360	4382453	4384138	+	TIG
CAZyme	HRGMv2_0156_1	HRGMv2_0156_1_3361	4384142	4386418	+	PL6 \| PL6_1
CAZyme	HRGMv2_0156_1	HRGMv2_0156_1_3362	4386455	4388662	+	PL17 \| PL17_2
pfam	HRGMv2_0156_1	HRGMv2_0156_1_3363	4388689	4389033	+	Cupin_2 \| Cupin_7
TC	HRGMv2_0156_1	HRGMv2_0156_1_3364	4389038	4390504	+	2.A.1.14.25
pfam	HRGMv2_0156_1	HRGMv2_0156_1_3365	4390527	4391279	+	adh_short \| KR \| adh_short_C2 \| SDR
CAZyme	HRGMv2_0156_1	HRGMv2_0156_1_3366	4391504	4392706	+	PL38

Gene ID: HRGMv2_0156_1_3350
Type: TC
Location: 4355805 - 4358963 (-)

Gene ID: HRGMv2_0156_1_3351
Type: TF
Location: 4359195 - 4363229 (+)

Gene ID: HRGMv2_0156_1_3352
Type: CAZyme
Location: 4363860 - 4365737 (+)

Gene ID: HRGMv2_0156_1_3353
Type: CAZyme
Location: 4365773 - 4367467 (+)

Gene ID: HRGMv2_0156_1_3354
Type: CAZyme
Location: 4367483 - 4369738 (+)

Gene ID: HRGMv2_0156_1_3355
Type: CAZyme
Location: 4369750 - 4373928 (+)

Gene ID: HRGMv2_0156_1_3356
Type: CAZyme
Location: 4373997 - 4376612 (+)

Gene ID: HRGMv2_0156_1_3357
Type: TF
Location: 4376785 - 4377504 (-)

Gene ID: HRGMv2_0156_1_3358
Type: TC
Location: 4377745 - 4380900 (+)

Gene ID: HRGMv2_0156_1_3359
Type: TC
Location: 4380914 - 4382431 (+)

Gene ID: HRGMv2_0156_1_3360
Type: pfam
Location: 4382453 - 4384138 (+)

Gene ID: HRGMv2_0156_1_3361
Type: CAZyme
Location: 4384142 - 4386418 (+)

Gene ID: HRGMv2_0156_1_3362
Type: CAZyme
Location: 4386455 - 4388662 (+)

Gene ID: HRGMv2_0156_1_3363
Type: pfam
Location: 4388689 - 4389033 (+)

Gene ID: HRGMv2_0156_1_3364
Type: TC
Location: 4389038 - 4390504 (+)

Gene ID: HRGMv2_0156_1_3365
Type: pfam
Location: 4390527 - 4391279 (+)

Gene ID: HRGMv2_0156_1_3366
Type: CAZyme
Location: 4391504 - 4392706 (+)

Taxonomic Lineage

Domain

Bacteria

→

Phylum

Bacteroidota

→

Class

Bacteroidia

→

Order

Bacteroidales

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Family

Bacteroidaceae

→

Genus

Bacteroides

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Species

Bacteroides ovatus

Gene Level Read Mapping

Diet (De Filippis et al., 2019)
Diet (Huang et al., 2024)
IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID	Condition Pair	log2FC	FDR P-value
HRGMv2_0156_1_3352	vegan > omnivore	2.76067	0.00026
HRGMv2_0156_1_3352	vegetarian > omnivore	2.35968	0.00153
HRGMv2_0156_1_3353	vegan > omnivore	1.60024	0.00026
HRGMv2_0156_1_3354	vegetarian > omnivore	1.71012	0.00153
HRGMv2_0156_1_3354	vegan > omnivore	2.86140	0.00026
HRGMv2_0156_1_3355	vegan > omnivore	1.67010	0.00026
HRGMv2_0156_1_3357	vegan > omnivore	1.13062	0.00026
HRGMv2_0156_1_3359	vegetarian > omnivore	1.09766	0.00153
HRGMv2_0156_1_3359	vegan > omnivore	1.46306	0.00026

Gene ID	Condition Pair	log2FC	FDR P-value
HRGMv2_0156_1_3359	vegan > flexitarian	1.01087	0.01389

Gene ID	Condition Pair	log2FC	FDR P-value
HRGMv2_0156_1_3350	nonIBD > CD	1.21841	0.00932
HRGMv2_0156_1_3351	nonIBD > CD	1.95924	0.00932
HRGMv2_0156_1_3351	UC > CD	1.43921	0.02217
HRGMv2_0156_1_3352	nonIBD > CD	2.34127	0.00932
HRGMv2_0156_1_3352	UC > CD	1.47642	0.02217
HRGMv2_0156_1_3353	nonIBD > CD	1.99767	0.00932
HRGMv2_0156_1_3353	UC > CD	1.59185	0.02217
HRGMv2_0156_1_3354	nonIBD > CD	1.87159	0.00932
HRGMv2_0156_1_3354	UC > CD	1.36100	0.02217
HRGMv2_0156_1_3355	nonIBD > CD	1.83863	0.00932
HRGMv2_0156_1_3355	UC > CD	1.21046	0.02217
HRGMv2_0156_1_3356	nonIBD > CD	1.70857	0.04573
HRGMv2_0156_1_3356	UC > CD	1.09001	0.02217
HRGMv2_0156_1_3357	UC > CD	1.83047	0.00661
HRGMv2_0156_1_3358	UC > CD	1.66665	0.02132
HRGMv2_0156_1_3359	UC > CD	2.01173	0.02217
HRGMv2_0156_1_3360	UC > CD	2.45722	0.02217
HRGMv2_0156_1_3361	UC > CD	1.81437	0.01796
HRGMv2_0156_1_3362	UC > CD	1.66541	0.02132
HRGMv2_0156_1_3363	UC > CD	1.62696	0.00584
HRGMv2_0156_1_3364	UC > CD	1.55495	0.02132
HRGMv2_0156_1_3365	UC > CD	1.22733	0.02132
HRGMv2_0156_1_3366	UC > CD	1.33529	0.02132

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