Cluster: HRGMv2_0156_CGC79
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 3
- Substrate: alpha-glucan
- Genome ID: HRGMv2_0156
- CGC Family ID: CGCFAM_00043
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0156_1 | HRGMv2_0156_1_3340 | 4335105 | 4338104 | + | 1.B.14.6.1 |
| TC | HRGMv2_0156_1 | HRGMv2_0156_1_3341 | 4338147 | 4339610 | + | 8.A.46.1.5 |
| pfam | HRGMv2_0156_1 | HRGMv2_0156_1_3342 | 4339647 | 4341161 | + | SusE | SusF_SusE | SusF_SusE |
| CAZyme | HRGMv2_0156_1 | HRGMv2_0156_1_3343 | 4341176 | 4342954 | + | GH66 |
| CAZyme | HRGMv2_0156_1 | HRGMv2_0156_1_3344 | 4342991 | 4345495 | + | GH31 |
| STP | HRGMv2_0156_1 | HRGMv2_0156_1_3345 | 4345642 | 4346979 | + | ATPase_2 |
| CAZyme | HRGMv2_0156_1 | HRGMv2_0156_1_3346 | 4347076 | 4349256 | - | GH16_3 |
Gene ID: HRGMv2_0156_1_3340
Type: TC
Location: 4335105 - 4338104 (+)
Type: TC
Location: 4335105 - 4338104 (+)
Gene ID: HRGMv2_0156_1_3341
Type: TC
Location: 4338147 - 4339610 (+)
Type: TC
Location: 4338147 - 4339610 (+)
Gene ID: HRGMv2_0156_1_3342
Type: pfam
Location: 4339647 - 4341161 (+)
Type: pfam
Location: 4339647 - 4341161 (+)
Gene ID: HRGMv2_0156_1_3343
Type: CAZyme
Location: 4341176 - 4342954 (+)
Type: CAZyme
Location: 4341176 - 4342954 (+)
Gene ID: HRGMv2_0156_1_3344
Type: CAZyme
Location: 4342991 - 4345495 (+)
Type: CAZyme
Location: 4342991 - 4345495 (+)
Gene ID: HRGMv2_0156_1_3345
Type: STP
Location: 4345642 - 4346979 (+)
Type: STP
Location: 4345642 - 4346979 (+)
Gene ID: HRGMv2_0156_1_3346
Type: CAZyme
Location: 4347076 - 4349256 (-)
Type: CAZyme
Location: 4347076 - 4349256 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides ovatus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0156_1_3345 | vegan > omnivore | 3.23450 | 0.00026 |
| HRGMv2_0156_1_3345 | vegetarian > omnivore | 2.20813 | 0.00153 |
| HRGMv2_0156_1_3346 | vegan > omnivore | 1.08315 | 0.00026 |