Cluster: HRGMv2_0156_CGC74
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0156
- CGC Family ID: CGCFAM_00461
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0156_1 | HRGMv2_0156_1_3233 | 4149925 | 4151496 | + | 3.D.10.1.4 |
| pfam | HRGMv2_0156_1 | HRGMv2_0156_1_3234 | 4151493 | 4151774 | + | DUF4884 |
| CAZyme | HRGMv2_0156_1 | HRGMv2_0156_1_3235 | 4152242 | 4153300 | + | GH130_4 |
| TC | HRGMv2_0156_1 | HRGMv2_0156_1_3236 | 4153300 | 4154562 | + | 2.A.1.33.2 |
| NULL(UNKNOWN) | HRGMv2_0156_1 | HRGMv2_0156_1_3237 | 4154579 | 4156279 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_0156_1 | HRGMv2_0156_1_3238 | 4156297 | 4159365 | + | 1.B.14.6.1 |
| TC | HRGMv2_0156_1 | HRGMv2_0156_1_3239 | 4159390 | 4160943 | + | 8.A.46.1.6 |
Gene ID: HRGMv2_0156_1_3233
Type: TC
Location: 4149925 - 4151496 (+)
Type: TC
Location: 4149925 - 4151496 (+)
Gene ID: HRGMv2_0156_1_3234
Type: pfam
Location: 4151493 - 4151774 (+)
Type: pfam
Location: 4151493 - 4151774 (+)
Gene ID: HRGMv2_0156_1_3235
Type: CAZyme
Location: 4152242 - 4153300 (+)
Type: CAZyme
Location: 4152242 - 4153300 (+)
Gene ID: HRGMv2_0156_1_3236
Type: TC
Location: 4153300 - 4154562 (+)
Type: TC
Location: 4153300 - 4154562 (+)
Gene ID: HRGMv2_0156_1_3237
Type:
Location: 4154579 - 4156279 (+)
Type:
Location: 4154579 - 4156279 (+)
Gene ID: HRGMv2_0156_1_3238
Type: TC
Location: 4156297 - 4159365 (+)
Type: TC
Location: 4156297 - 4159365 (+)
Gene ID: HRGMv2_0156_1_3239
Type: TC
Location: 4159390 - 4160943 (+)
Type: TC
Location: 4159390 - 4160943 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides ovatus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0156_1_3235 | vegan > omnivore | 1.24717 | 0.00026 |
| HRGMv2_0156_1_3236 | vegan > omnivore | 1.16263 | 0.00026 |
| HRGMv2_0156_1_3237 | vegan > omnivore | 1.04974 | 0.00026 |
| HRGMv2_0156_1_3238 | vegan > omnivore | 1.11655 | 0.00026 |
| HRGMv2_0156_1_3239 | vegan > omnivore | 1.15254 | 0.00026 |